View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2479_high_1 (Length: 936)

Name: NF2479_high_1
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2479_high_1
NF2479_high_1
[»] chr5 (31 HSPs)
chr5 (11-917)||(23732058-23732967)
chr5 (11-917)||(23813321-23814252)
chr5 (11-773)||(23729330-23730095)
chr5 (302-917)||(23860567-23861185)
chr5 (11-765)||(23644474-23645253)
chr5 (302-917)||(23673626-23674244)
chr5 (355-917)||(23769253-23769805)
chr5 (355-917)||(23819101-23819653)
chr5 (697-917)||(23764199-23764419)
chr5 (11-300)||(23780108-23780417)
chr5 (11-300)||(23867061-23867370)
chr5 (14-300)||(23768862-23769167)
chr5 (14-300)||(23818710-23819015)
chr5 (17-211)||(23674425-23674630)
chr5 (17-211)||(23860181-23860386)
chr5 (231-300)||(23674318-23674387)
chr5 (231-300)||(23860424-23860493)
chr5 (750-871)||(23766854-23766975)
chr5 (750-871)||(23816702-23816823)
chr5 (302-374)||(23780483-23780554)
chr5 (302-374)||(23867436-23867507)
chr5 (319-389)||(23687221-23687291)
chr5 (319-389)||(23737202-23737272)
chr5 (359-649)||(23766469-23766762)
chr5 (359-649)||(23816317-23816610)
chr5 (741-817)||(11081805-11081881)
chr5 (760-809)||(20292995-20293044)
chr5 (416-478)||(16947834-16947896)
chr5 (760-809)||(20301443-20301492)
chr5 (760-809)||(20305856-20305905)
chr5 (760-809)||(20310260-20310309)
[»] chr3 (40 HSPs)
chr3 (357-584)||(1940176-1940399)
chr3 (422-580)||(2932153-2932311)
chr3 (456-607)||(997784-997935)
chr3 (434-496)||(1027798-1027860)
chr3 (415-591)||(989623-989798)
chr3 (427-591)||(1022695-1022859)
chr3 (456-607)||(1014174-1014325)
chr3 (427-497)||(1007761-1007831)
chr3 (741-811)||(4142117-4142187)
chr3 (422-580)||(1889244-1889408)
chr3 (741-851)||(3754558-3754668)
chr3 (550-590)||(956612-956652)
chr3 (751-811)||(4157937-4157997)
chr3 (457-589)||(7431747-7431879)
chr3 (750-865)||(956325-956440)
chr3 (746-852)||(2686300-2686409)
chr3 (478-580)||(1890772-1890874)
chr3 (753-811)||(2696727-2696785)
chr3 (750-811)||(1007459-1007520)
chr3 (750-811)||(1022487-1022548)
chr3 (541-590)||(1936757-1936806)
chr3 (746-811)||(3746006-3746071)
chr3 (546-591)||(12133312-12133357)
chr3 (740-820)||(989385-989465)
chr3 (541-580)||(1897448-1897487)
chr3 (541-580)||(1906894-1906933)
chr3 (541-580)||(1930946-1930985)
chr3 (541-580)||(12218280-12218319)
chr3 (758-809)||(37753345-37753396)
chr3 (455-497)||(802884-802926)
chr3 (753-835)||(803213-803295)
chr3 (357-391)||(900375-900409)
chr3 (747-809)||(2644351-2644413)
chr3 (747-809)||(2659141-2659203)
chr3 (747-809)||(7334228-7334290)
chr3 (541-575)||(7427364-7427398)
chr3 (549-590)||(783590-783631)
chr3 (550-591)||(802977-803018)
chr3 (746-811)||(2678387-2678452)
chr3 (760-809)||(13498224-13498273)
[»] chr4 (5 HSPs)
chr4 (434-497)||(22671811-22671874)
chr4 (753-821)||(20019767-20019835)
chr4 (462-595)||(20019473-20019600)
chr4 (753-821)||(20016180-20016249)
chr4 (736-863)||(22672105-22672232)
[»] chr2 (3 HSPs)
chr2 (503-591)||(33038434-33038522)
chr2 (356-393)||(36577819-36577856)
chr2 (549-591)||(33026902-33026944)
[»] chr6 (2 HSPs)
chr6 (546-591)||(24417244-24417289)
chr6 (541-580)||(9819606-9819645)
[»] scaffold0044 (1 HSPs)
scaffold0044 (541-589)||(89387-89435)
[»] chr1 (1 HSPs)
chr1 (741-810)||(51381438-51381507)


Alignment Details
Target: chr5 (Bit Score: 657; Significance: 0; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 11 - 917
Target Start/End: Complemental strand, 23732967 - 23732058
Alignment:
Q  11 atgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaag 110  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  23732967 atgaacacgttgaaataaagcactgcagaattgtgcaaacaaaacagaaacgctaaatattgcagcaaattaaagtgattatgcagaaatttaaaccaag 23732868  T
Q  111 agcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaat 210  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||||| ||||||| ||| |||||| ||||| |||||||||||| |||||||||||    
T  23732867 agcgcaacagtgaaaatatcaaagaatttaaaagcatgatttagagacgaaatgaatacgcctatagaacaaatacgatagaattatttagtaccaaaat 23732768  T
Q  211 atcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaatgactgggaatta 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23732767 atcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttatgcagctcatagcaggcatttaaccaaacatactaatgactgggaatta 23732668  T
Q  311 tataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataactacaatttctctatcaagctacagattaag 410  Q
    | |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23732667 tctaaactgaaatgcaataatgcatgaagagataataaaaacctttaacaaacaaataaatgaaaataaccacaatttctctatcaagctacagattaag 23732568  T
Q  411 atgaccattaattaataatgatccatgaagtagctaataatcagaacaagtacaaaataaatatcataaacataaattaaaatatagtttttagttgaat 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  | | ||||||||||||||||||||||||||||||||||||||||||||    
T  23732567 atgaccattaattaataatgatccatgaagtagctaataatcagaactagcgcgagataaatatcataaacataaattaaaatatagtttttagttgaat 23732468  T
Q  511 ctcatgttcaagcgatatagcatcactacgacattctaacattaagaacaaggtgatatcaaactttcaatgcagacttctaggatggattcaaactgaa 610  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| ||    
T  23732467 ctcatgttcaagcgatatagcatcactacgacattctaacattaagaacaaggtaatatcaaactttcaacgcagacttctaggatgaattcaaacttaa 23732368  T
Q  611 ---aagaaaactttacaaagccatttatagaattgtaaaaaacccagctccgggtcgaaaccgttgtagaattccacgtcactaggccatcctcaaaa-a 706  Q
       |||||||||| ||| |||||||| ||||||||||||||||| || ||||||||||| ||  |||||| |||||||||||||||||||||||||||      
T  23732367 aataagaaaacttaacagagccatttgtagaattgtaaaaaaccaagttccgggtcgaatcctgtgtagacttccacgtcactaggccatcctcaaaatt 23732268  T
Q  707 tatgcattccattggcaaagaaataataagatggcat-gaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaa 805  Q
    |||||||| ||||||||||||||||||   ||||||| ||||||||||||||||| |||| |||||||||||||  |||||||||||||||| |||||||    
T  23732267 tatgcattacattggcaaagaaataat---atggcatggaaaggaatagtgaacagtttattccaagacgctttattcccatattccttcataatccaaa 23732171  T
Q  806 catcattactagaaatccagcacaaacaattcccgaaaacactcaagtgcaaagtacgtgaatctattgctctataatcataatc-aggtagcaaaactt 904  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| || ||||||||||| ||| ||||||||||| ||| ||||||||||    
T  23732170 catcattactagaaatccaccacaaacaattcctgaaaacactcaagtggaaagaacatgaatctattgttctttaatcataatcaaggaagcaaaactt 23732071  T
Q  905 ttttataagactc 917  Q
    |||||||||||||    
T  23732070 ttttataagactc 23732058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 11 - 917
Target Start/End: Original strand, 23813321 - 23814252
Alignment:
Q  11 atgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattat---gcagaaatttaaacc 107  Q
    ||||||||||| ||| ||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||| |||||||   |||||||||||||||    
T  23813321 atgaacacattaaaacaaagcactgcagaattgtgcaaacaaaacagaa-cgctaaaaattgcagcaaactaaaatgattattatgcagaaatttaaacc 23813419  T
Q  108 aagagcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaa 207  Q
    |||| | ||||||||||||||| |||||| ||||||| | ||||  |||| || ||| | | || ||||||||||||||||||  ||| |||| ||||||    
T  23813420 aagaacacaacagtgaaaatatcgaagaaattaaaactaagattacgagaggaaatgtacacgctaatagaataaataagatatcattgttcactaccaa 23813519  T
Q  208 aatat--------------------cgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaacca 287  Q
    ||||                     | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  23813520 aataattcccttcaaaggattaatcccaagtattttggacagcgtgtgaaagatttaagacattacgaaatttgtacagctcatagcaggcatttaacca 23813619  T
Q  288 aacatactaatgactgggaattatataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataactacaatt 387  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23813620 aacaaactaatgactgggaattatataaactgaaatgcaataatgcatgaggagataataaaaacctttaacaaacaaataaatgaaaataactacaatt 23813719  T
Q  388 tctctatcaagctacagattaagatgaccattaattaataatgatccatgaagtagctaataatcagaacaagtacaaaataaatatcataaacataaat 487  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  23813720 tctctatcaagctacagattaagatgaccattaattagtaatgacacatgaagtagctgataataagaacaagtacaaaataaatatcataaacataaat 23813819  T
Q  488 taaaatatagtttttagttgaatctcatgttcaagcgatatagcatcactacgacattctaacattaagaacaaggtgatatcaaactttcaatgcagac 587  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||    
T  23813820 taaaatatagttcttagttgaatctcatgttcaagcgatatagcatcactactacattctaacattaagaacaaggtgatatcaaactttcgacgcagac 23813919  T
Q  588 ttctaggatggattcaaactgaa---aagaaaactttacaaagccatttatagaattgtaaaaaacccagctccgggtcgaaaccgttgtagaattccac 684  Q
    |||||||||| ||||||||||||   |||||||||||||| |||||||||||||||||||||||||| || |  || ||||| ||   ||||| ||||||    
T  23813920 ttctaggatgaattcaaactgaaaataagaaaactttacagagccatttatagaattgtaaaaaaccaagttttggatcgaatcctgcgtagacttccac 23814019  T
Q  685 gtcactaggccatcctcaaaaatatgcattccattggcaaagaaataataagatggcatgaaaggaatagtgaacaatttagtccaagacgctttcatcc 784  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23814020 gtcactaggccatcctcaaaaatatgcattacattggcaaagaaataataagatggcatgaaaggaatagtgaacaatttagtccaagacgctgtcatcc 23814119  T
Q  785 catattccttcattatccaaacatcattactagaaatccagcacaaacaattcccgaaaacactcaagtgcaaagtacgtgaatctattgctctataatc 884  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23814120 catattccttcattatccaaacatcattactagaaatccagcacaaacaattcccgaaaacactcaagtgcaaagtaagtgaatctattgctctataatc 23814219  T
Q  885 ataatcaggtagcaaaacttttttataagactc 917  Q
    | |||||||||||||||||||||||||||||||    
T  23814220 acaatcaggtagcaaaacttttttataagactc 23814252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 11 - 773
Target Start/End: Complemental strand, 23730095 - 23729330
Alignment:
Q  11 atgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23730095 atgaacacattgaaataaagcactgcagaattgtgcaaacaaaacagaaacgttaaatattgcagcaaattaaagtgattatgcagaaatttaaaccaag 23729996  T
Q  111 agcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| |||||||||||    
T  23729995 agcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatacgccaatagaacaaatacgatagaattatttagtaccaaaat 23729896  T
Q  211 atcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaatgactgggaatta 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  23729895 atcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcttttaaccaaccatactaatgactgggaatta 23729796  T
Q  311 tataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataactacaatttctctatcaagctacagattaag 410  Q
    |||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23729795 tataaactgaaatgcaataatgcatgaggagataataaaaacctttaacaaacaaataaatgaaaataaccacaatttctctatcaagctacagattaag 23729696  T
Q  411 atgaccattaattaataatgatccatgaagtagctaataatcagaacaagtacaaaataaatatcataaacataaattaaaatatagtttttagttgaat 510  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||    
T  23729695 atgaccattaattaataatgatccacgaagtagctaataatcagaactagtgcgagataaatatcataaacataaattaaaatatagtttttagttgaat 23729596  T
Q  511 ctcatgttcaagcgatatagcatcactacgacattctaacattaagaacaaggtgatatcaaactttcaatgcagacttctaggatggattcaaactgaa 610  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||||||||| ||    
T  23729595 ctcatgttcaagcgatgtagcatcactacgacattctaacattaagaacaaggtaatatcgaactttcaacgcagacttctaggatgaattcaaacttaa 23729496  T
Q  611 ---aagaaaactttacaaagccatttatagaattgtaaaaaacccagctccgggtcgaaaccgttgtagaattccacgtcactaggccatcctcaaaaat 707  Q
       |||||||||| ||| |||||||| ||||||||||||||||| || ||||||||||| ||  |||||| ||||||||||||||||||||||||||| |    
T  23729495 aataagaaaacttaacagagccatttgtagaattgtaaaaaaccaagttccgggtcgaatcctgtgtagacttccacgtcactaggccatcctcaaaatt 23729396  T
Q  708 atgcattccattggcaaagaaataataagatggcatgaaaggaatagtgaacaatttagtccaaga 773  Q
    ||||||| || ||||||||| ||||||||||||  |||||||| |||||| |||||||||||||||    
T  23729395 atgcattacaatggcaaagagataataagatgggttgaaaggagtagtgagcaatttagtccaaga 23729330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 302 - 917
Target Start/End: Original strand, 23860567 - 23861185
Alignment:
Q  302 tgggaattatataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataactacaatttctctatcaagcta 401  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||    
T  23860567 tgggaattatataaactgaaatgcaataatgcatgaggagataataaaaacctttaacaaacaaataaatgaaaataactacaatttatttatcaagcta 23860666  T
Q  402 cagattaagatgaccattaattaataatgatccatgaagtagctaataatcagaacaagtacaaaataaatatcataaacataaattaaaatatagtttt 501  Q
    ||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| || ||||||||||||||||  ||||||||||||||||||||    
T  23860667 cagattaagatgaccattaattagtaatgacccatgaagtaggtaataatcagaacaattataaaataaatatcataagtataaattaaaatatagtttt 23860766  T
Q  502 tagttgaatctcatgttcaagcgatatagcatcactacgacattctaacattaagaacaaggtgatatcaaactttcaatgcagacttctaggatggatt 601  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||  |||||||||| |||||||||||||||| |||    
T  23860767 tagttgaatctcatgttcaagcgatatcgcatcactactacattctaacattaagaataaggtgatactaaactttcaacgcagacttctaggatgaatt 23860866  T
Q  602 caaactgaaaa---gaaaactttacaaagccatttatagaattgtaaaaaacccagctccgggtcgaaaccgttgtagaattccacgtcactaggccatc 698  Q
     ||||||||||   |||||||||||| |||||||| ||||||||||||||||| || ||||||||||| ||  |||||| ||||||||||||||||||||    
T  23860867 taaactgaaaataagaaaactttacagagccatttgtagaattgtaaaaaaccaagttccgggtcgaatcctgtgtagacttccacgtcactaggccatc 23860966  T
Q  699 ctcaaaaatatgcattccattggcaaagaaataataagatggcatgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcatt 798  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23860967 ctcaaaaatatgcattacattggcaaagaaataataagatggcatgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcatt 23861066  T
Q  799 atccaaacatcattactagaaatccagcacaaacaattcccgaaaacactcaagtgcaaagtacgtgaatctattgctctataatcataatcaggtagca 898  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23861067 atccaaacatcattactagaaatccagcacaaacaattcctgaaaacactcaagtgcaaagtacgtgaatctattgctctataatcataatcaggtagca 23861166  T
Q  899 aaacttttttataagactc 917  Q
    |||||||||||||||||||    
T  23861167 aaacttttttataagactc 23861185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 11 - 765
Target Start/End: Complemental strand, 23645253 - 23644474
Alignment:
Q  11 atgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattat---gcagaaatttaaacc 107  Q
    ||||||||||| ||| ||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||| |||||||   |||||||||||||||    
T  23645253 atgaacacattaaaacaaagcactgcagaattgtgcaaacaaaacagaa-cgctaaaaattgcagcaaactaaaatgattattatgcagaaatttaaacc 23645155  T
Q  108 aagagcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaa 207  Q
    |||| | ||||||||||||||| |||||| ||||||| | ||||  |||| || ||| | | || ||||||||||||||||||  ||| |||| ||||||    
T  23645154 aagaacacaacagtgaaaatatcgaagaaattaaaactaagattacgagaggaaatgtacacgctaatagaataaataagatatcattgttcactaccaa 23645055  T
Q  208 aatat--------------------cgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaacca 287  Q
    ||||                     | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  23645054 aataattcccttcaaaggattaatcccaagtattttggacagcgtgtgaaagatttaagacattacgaaatttgtacagctcatagcaggcatttaacca 23644955  T
Q  288 aacatactaatgactgggaattatataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataactacaatt 387  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23644954 aacaaactaatgactgggaattatataaactgaaatgcaataatgcatgaggagataataaaaacctttaacaaacaaataaatgaaaataactacaatt 23644855  T
Q  388 tctctatcaagctacagattaagatgaccattaattaataatgatccatgaagtagctaataatcagaacaagtacaaaataaatatcataaacataaat 487  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||| ||||| ||||| ||  | | |||||||||||||||||||||    
T  23644854 tctctatcaagctacagattaagatgaccattaattagtaatgacacatgaagtagctgataataagaactagcgcgagataaatatcataaacataaat 23644755  T
Q  488 taaaatatagtttttagttgaatctcatgttcaagcgatatagcatcactacgacattctaacattaagaacaaggtgatatcaaactttcaatgcagac 587  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  23644754 taaaatatagttcttagttgaatctcatgttcaagcgatatagcatcactactacattctaacattaagaacaaggtgatatcaaactttcaacgcagac 23644655  T
Q  588 ttctaggatggattcaaactgaa---aagaaaactttacaaagccatttatagaattgtaaaaaacccagctccgggtcgaaaccgttgtagaattccac 684  Q
    |||||||||| ||||||||||||   |||||||||| ||| |||||||| ||||||||||||||||| || ||||| ||||| ||  |||||| ||||||    
T  23644654 ttctaggatgaattcaaactgaaaataagaaaacttaacagagccatttgtagaattgtaaaaaaccaagttccggatcgaatcctgtgtagacttccac 23644555  T
Q  685 gtcactaggccatcctcaaaaatatgcattccattggcaaagaaataataagatggcatgaaaggaatagtgaacaattta 765  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| || ||| | ||||||||||    
T  23644554 gtcactaggccatcctcaaaaatatgcattacattggcaaagaaataataagatgggatgagagtaatggagaacaattta 23644474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 302 - 917
Target Start/End: Complemental strand, 23674244 - 23673626
Alignment:
Q  302 tgggaattatataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataactacaatttctctatcaagcta 401  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||    
T  23674244 tgggaattatataaactgaaatgcaataatgcatgaggagataataaaaacctttaacaaacaaataaatgaaaataactacaatttatttatcaagcta 23674145  T
Q  402 cagattaagatgaccattaattaataatgatccatgaagtagctaataatcagaacaagtacaaaataaatatcataaacataaattaaaatatagtttt 501  Q
    ||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| || ||||||||||||||||  ||||||||||||||||||||    
T  23674144 cagattaagatgaccattaattagtaatgacccatgaagtaggtaataatcagaacaattataaaataaatatcataagtataaattaaaatatagtttt 23674045  T
Q  502 tagttgaatctcatgttcaagcgatatagcatcactacgacattctaacattaagaacaaggtgatatcaaactttcaatgcagacttctaggatggatt 601  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||  |||||||||| |||||||||||||||| |||    
T  23674044 tagttgaatctcatgttcaagcgatatcgcatcactactacattctaacattaagaataaggtgatactaaactttcaacgcagacttctaggatgaatt 23673945  T
Q  602 caaactgaa---aagaaaactttacaaagccatttatagaattgtaaaaaacccagctccgggtcgaaaccgttgtagaattccacgtcactaggccatc 698  Q
     ||||||||   |||||||||||||| |||||||| ||||||||||||||||| || ||||||||||| ||  |||||| ||||||||||||||||||||    
T  23673944 taaactgaaaataagaaaactttacagagccatttgtagaattgtaaaaaaccaagttccgggtcgaatcctgtgtagacttccacgtcactaggccatc 23673845  T
Q  699 ctcaaaaatatgcattccattggcaaagaaataataagatggcatgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcatt 798  Q
    |||||||||||||||| ||||||||||||||||||| ||||| | ||||||||| | ||||||||||| ||| || | |||| ||  || ||||||||||    
T  23673844 ctcaaaaatatgcattacattggcaaagaaataataggatgggaggaaaggaatggcgaacaatttagaccacgatgttttcttctaatcttccttcatt 23673745  T
Q  799 atccaaacatcattactagaaatccagcacaaacaattcccgaaaacactcaagtgcaaagtacgtgaatctattgctctataatcataatcaggtagca 898  Q
    |||||||||||||||||||| ||||| || ||||| || | || |||||||| | ||||||| ||||| ||| ||| ||||||||||||||| |||| ||    
T  23673744 atccaaacatcattactagacatccaccaaaaacacttgctgacaacactcaggagcaaagttcgtgattctgttgttctataatcataatctggtaaca 23673645  T
Q  899 aaacttttttataagactc 917  Q
    |||||||||||||||||||    
T  23673644 aaacttttttataagactc 23673626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 355 - 917
Target Start/End: Original strand, 23769253 - 23769805
Alignment:
Q  355 ttaacaaacaaataaatgaaaataactacaatttctctatcaagctacagattaagatgaccattaattaataatgatccatgaagtagctaataatcag 454  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23769253 ttaacaatcaaataaatgaaaataactacaatttctctatcaagctacagattaagatgaccattaattaataatgatccatgaagtagctaataatcag 23769352  T
Q  455 aacaagtacaaaataaatatcataaacataaattaaaatatagtttttagttgaatctcatgttcaagcgatatagcatcactacgacattctaacatta 554  Q
    ||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||                |||||||||| || ||||||||||||||    
T  23769353 aacgagtgcgagataaatatcataaacataaattaaaatatagtttttagttgaat----------------atagcatcacaactacattctaacatta 23769436  T
Q  555 agaacaaggtgatatcaaactttcaatgcagacttctaggatggattcaaactgaaaa---gaaaactttacaaagccatttatagaattgtaaaaaacc 651  Q
    |||||||||||||||||||||||||| ||||| |||||||||| ||  ||||||||||   |||||||||||| ||||||||||||||||||||||||||    
T  23769437 agaacaaggtgatatcaaactttcaacgcagatttctaggatgtatctaaactgaaaataagaaaactttacagagccatttatagaattgtaaaaaacc 23769536  T
Q  652 cagctccgggtcgaaaccgttgtagaattccacgtcactaggccatcctcaaaaatatgcattccattggcaaagaaat---aataagatggcatgaaag 748  Q
     || |||||||| || ||   ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||   ||||||||||||||||||    
T  23769537 aagttccgggtcaaatcctgcgtagacttccacgtcactaggccatcctcaaaaatatgcattacattggcaaagagatgataataagatggcatgaaag 23769636  T
Q  749 gaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaatccagcacaaacaattcccgaaaacact 848  Q
    | |||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23769637 gtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcattactacaaatccagcacaaacaattcccgaaaacact 23769736  T
Q  849 caagtgcaaagtacgtgaatctattgctctataatcataatcaggtagcaaaacttttttataagactc 917  Q
    ||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  23769737 caagtgcaaagtacgtgaaccaatttctctataatcataatccggtagcaaaacttttttataagactc 23769805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 355 - 917
Target Start/End: Original strand, 23819101 - 23819653
Alignment:
Q  355 ttaacaaacaaataaatgaaaataactacaatttctctatcaagctacagattaagatgaccattaattaataatgatccatgaagtagctaataatcag 454  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23819101 ttaacaatcaaataaatgaaaataactacaatttctctatcaagctacagattaagatgaccattaattaataatgatccatgaagtagctaataatcag 23819200  T
Q  455 aacaagtacaaaataaatatcataaacataaattaaaatatagtttttagttgaatctcatgttcaagcgatatagcatcactacgacattctaacatta 554  Q
    ||| ||| | | ||||||||||||||||||||||||||||||||||||||||||||                |||||||||| || ||||||||||||||    
T  23819201 aacgagtgcgagataaatatcataaacataaattaaaatatagtttttagttgaat----------------atagcatcacaactacattctaacatta 23819284  T
Q  555 agaacaaggtgatatcaaactttcaatgcagacttctaggatggattcaaactgaaaa---gaaaactttacaaagccatttatagaattgtaaaaaacc 651  Q
    |||||||||||||||||||||||||| ||||| |||||||||| ||  ||||||||||   |||||||||||| ||||||||||||||||||||||||||    
T  23819285 agaacaaggtgatatcaaactttcaacgcagatttctaggatgtatctaaactgaaaataagaaaactttacagagccatttatagaattgtaaaaaacc 23819384  T
Q  652 cagctccgggtcgaaaccgttgtagaattccacgtcactaggccatcctcaaaaatatgcattccattggcaaagaaat---aataagatggcatgaaag 748  Q
     || |||||||| || ||   ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||   ||||||||||||||||||    
T  23819385 aagttccgggtcaaatcctgcgtagacttccacgtcactaggccatcctcaaaaatatgcattacattggcaaagagatgataataagatggcatgaaag 23819484  T
Q  749 gaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaatccagcacaaacaattcccgaaaacact 848  Q
    | |||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23819485 gtatagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcattactacaaatccagcacaaacaattcccgaaaacact 23819584  T
Q  849 caagtgcaaagtacgtgaatctattgctctataatcataatcaggtagcaaaacttttttataagactc 917  Q
    ||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||    
T  23819585 caagtgcaaagtacgtgaaccaatttctctataatcataatccggtagcaaaacttttttataagactc 23819653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 697 - 917
Target Start/End: Original strand, 23764199 - 23764419
Alignment:
Q  697 tcctcaaaaatatgcattccattggcaaagaaataataagatggcatgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttca 796  Q
    ||||||||| || ||||| |||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23764199 tcctcaaaattaagcatttcattagaaaagaaataataagatggcatgaaaggaatagtgaacaatgtagtccaagacgctttcatcccatattccttca 23764298  T
Q  797 ttatccaaacatcattactagaaatccagcacaaacaattcccgaaaacactcaagtgcaaagtacgtgaatctattgctctataatcataatcaggtag 896  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| | | |||||||||||||||| |||||    
T  23764299 ttatccaaacatcattactacaaatccagcacaaacaattccggaaaacaatcaagtgcaaagtacgtgaatcaaattctctataatcataatccggtag 23764398  T
Q  897 caaaacttttttataagactc 917  Q
    |||||||||||||||||||||    
T  23764399 caaaacttttttataagactc 23764419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 23780108 - 23780417
Alignment:
Q  11 atgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaag 110  Q
    ||||||||||||||||||||||| |||||| |||||||||||| ||||||||   |||||||||||||| | ||||||||||| ||||||||||||||||    
T  23780108 atgaacacattgaaataaagcacagcagaaatgtgcaaacaaaacagaaacgccgaaaattgcagcaaactgaagtgattatgaagaaatttaaaccaag 23780207  T
Q  111 agcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaat 210  Q
    | ||| ||||||||||||| |||| | |||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  23780208 aacgcgacagtgaaaatatcgaagtaattaaaaccatgatttagagaggagatgaatacgccaatagaataaataagatagcattattcagtagcaaaat 23780307  T
Q  211 a--------------------tcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaac 290  Q
    |                     | |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  23780308 aattcccttcaaaagtttaaccccaagtattttgtacagcgtgtgaaagatttgagacattacgaaatttgtgcggctcatagcagacatttaaccaaac 23780407  T
Q  291 atactaatga 300  Q
    ||||||||||    
T  23780408 atactaatga 23780417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 23867061 - 23867370
Alignment:
Q  11 atgaacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaag 110  Q
    ||||||||||||||||||||||| |||||| |||||||||||| ||||||||   |||||||||||||| | ||||||||||| ||||||||||||||||    
T  23867061 atgaacacattgaaataaagcacagcagaaatgtgcaaacaaaacagaaacgccgaaaattgcagcaaactgaagtgattatgaagaaatttaaaccaag 23867160  T
Q  111 agcgcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaat 210  Q
    | ||| ||||||||||||| |||| | |||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  23867161 aacgcgacagtgaaaatatcgaagtaattaaaaccatgatttagagaggagatgaatacgccaatagaataaataagatagcattattcagtagcaaaat 23867260  T
Q  211 a--------------------tcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaac 290  Q
    |                     | |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  23867261 aattcccttcaaaagtttaaccccaagtattttgtacagcgtgtgaaagatttgagacattacgaaatttgtgcggctcatagcagacatttaaccaaac 23867360  T
Q  291 atactaatga 300  Q
    ||||||||||    
T  23867361 atactaatga 23867370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 14 - 300
Target Start/End: Original strand, 23768862 - 23769167
Alignment:
Q  14 aacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagc 113  Q
    ||||| |||||||||| | ||||||| |||| |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23768862 aacaccttgaaataaaccgctgcagacttgttcaaacaaaacagaaacactaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagaac 23768961  T
Q  114 gcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata-- 211  Q
    |||||||| ||||||| |||||| ||||||||| ||||  |||| || ||||| | || |||||||||| |||||||| ||||||||| |||||||||      
T  23768962 gcaacagttaaaatatcgaagaaattaaaaccaagattacgagaggaaatgaacacgctaatagaataattaagatagcattattcag-accaaaataat 23769060  T
Q  212 ------------------tcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacata 293  Q
                       | |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23769061 taccttcaaaggtttaaccccaagtattttggacaacgtgtgaaagatttgagacattacgaaatttgtgcggctcatagcaggcatttaaccaaacata 23769160  T
Q  294 ctaatga 300  Q
    |||||||    
T  23769161 ctaatga 23769167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 14 - 300
Target Start/End: Original strand, 23818710 - 23819015
Alignment:
Q  14 aacacattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagc 113  Q
    ||||| |||||||||| | ||||||| |||| |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23818710 aacaccttgaaataaaccgctgcagacttgttcaaacaaaacagaaacactaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagaac 23818809  T
Q  114 gcaacagtgaaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata-- 211  Q
    |||||||| ||||||| |||||| ||||||||| ||||  |||| || ||||| | || |||||||||| |||||||| ||||||||| |||||||||      
T  23818810 gcaacagttaaaatatcgaagaaattaaaaccaagattacgagaggaaatgaacacgctaatagaataattaagatagcattattcag-accaaaataat 23818908  T
Q  212 ------------------tcgaagtattttggacagcgtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacata 293  Q
                       | |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23818909 taccttcaaaggtttaaccccaagtattttggacaacgtgtgaaagatttgagacattacgaaatttgtgcggctcatagcaggcatttaaccaaacata 23819008  T
Q  294 ctaatga 300  Q
    |||||||    
T  23819009 ctaatga 23819015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 23674630 - 23674425
Alignment:
Q  17 acattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtg---attatgcagaaa-tttaaaccaagag 112  Q
    ||||| ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| |||| ||   |||||||||||| ||||||||||||     
T  23674630 acattaaaataaagcactgcagaattgtgcaaacaaaacagaaatgctaaaaattgcagcaaactaaactgattattatgcagaaattttaaaccaagaa 23674531  T
Q  113 cgcaacagtgaaaatattgaagaatttaaaaccatgatt-------tagagacgagatgaatatgccaatagaataaataagatagaattattcagtacc 205  Q
    ||||||||||||||||| |||||| ||||||||| ||||       | |||| || ||||| | || |||||| |||||||||| | ||| |||||||||    
T  23674530 cgcaacagtgaaaatatcgaagaaattaaaaccaagattacgagagtcgagaggaaatgaacacgcaaatagagtaaataagattgcattgttcagtacc 23674431  T
Q  206 aaaata 211  Q
    ||||||    
T  23674430 aaaata 23674425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 23860181 - 23860386
Alignment:
Q  17 acattgaaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtg---attatgcagaaa-tttaaaccaagag 112  Q
    ||||| ||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| |||| ||   |||||||||||| ||||||||||||     
T  23860181 acattaaaataaagcactgcagaattgtgcaaacaaaacagaaatgctaaaaattgcagcaaactaaactgattattatgcagaaattttaaaccaagaa 23860280  T
Q  113 cgcaacagtgaaaatattgaagaatttaaaaccatgatt-------tagagacgagatgaatatgccaatagaataaataagatagaattattcagtacc 205  Q
    ||||||||||||||||| |||||| ||||||||| ||||       | |||| || ||||| | || |||||| |||||||||| | ||| |||||||||    
T  23860281 cgcaacagtgaaaatatcgaagaaattaaaaccaagattacgagagtcgagaggaaatgaacacgcaaatagagtaaataagattgcattgttcagtacc 23860380  T
Q  206 aaaata 211  Q
    ||||||    
T  23860381 aaaata 23860386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 23674387 - 23674318
Alignment:
Q  231 gtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaatga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  23674387 gtgtgaaagatttgagacattacgaaatttgtgcagctcatagaaggcatttaaccaaacatacaaatga 23674318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 23860424 - 23860493
Alignment:
Q  231 gtgtgaaagatttgagacattacgaaatttgtgcagctcatagcaggcatttaaccaaacatactaatga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  23860424 gtgtgaaagatttgagacattacgaaatttgtgcagctcatagaaggcatttaaccaaacatacaaatga 23860493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 750 - 871
Target Start/End: Original strand, 23766854 - 23766975
Alignment:
Q  750 aatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaatccagcacaaacaattcccgaaaacactc 849  Q
    ||||||||||||||||||||||||| ||||  | |||||||| ||||| |||||||||||||||| |||||    |||||||||||||| | ||| ||||    
T  23766854 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaaacgaggcacaaacaattcctgcaaaaactc 23766953  T
Q  850 aagtgcaaagtacgtgaatcta 871  Q
    |||||||||||| | |||||||    
T  23766954 aagtgcaaagtatgcgaatcta 23766975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 750 - 871
Target Start/End: Original strand, 23816702 - 23816823
Alignment:
Q  750 aatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaatccagcacaaacaattcccgaaaacactc 849  Q
    ||||||||||||||||||||||||| ||||  | |||||||| ||||| |||||||||||||||| |||||    |||||||||||||| | ||| ||||    
T  23816702 aatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaaacgaggcacaaacaattcctgcaaaaactc 23816801  T
Q  850 aagtgcaaagtacgtgaatcta 871  Q
    |||||||||||| | |||||||    
T  23816802 aagtgcaaagtatgcgaatcta 23816823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 302 - 374
Target Start/End: Original strand, 23780483 - 23780554
Alignment:
Q  302 tgggaattatataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaa 374  Q
    |||||| |||||||| | |||||||||||||||||| ||||||||||||| |||||||||||||||| |||||    
T  23780483 tgggaactatataaact-aaatgcaataatgcatgaggagataataaaaacctttaacaaacaaatatatgaa 23780554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 302 - 374
Target Start/End: Original strand, 23867436 - 23867507
Alignment:
Q  302 tgggaattatataaattgaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaa 374  Q
    |||||| |||||||| | |||||||||||||||||| ||||||||||||| |||||||||||||||| |||||    
T  23867436 tgggaactatataaact-aaatgcaataatgcatgaggagataataaaaacctttaacaaacaaatatatgaa 23867507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 23687291 - 23687221
Alignment:
Q  319 gaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataactacaatttc 389  Q
    ||||||||||||||||||  ||||||| | ||| |||| |||||||||||  |||||||||||||||||||    
T  23687291 gaaatgcaataatgcatgctgagataacataaaccttttacaaacaaataggtgaaaataactacaatttc 23687221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 23737272 - 23737202
Alignment:
Q  319 gaaatgcaataatgcatgaagagataataaaaatctttaacaaacaaataaatgaaaataactacaatttc 389  Q
    ||||||||||||||||||  ||||||| | ||| |||| |||||||||||  |||||||||||||||||||    
T  23737272 gaaatgcaataatgcatgctgagataacataaaccttttacaaacaaataggtgaaaataactacaatttc 23737202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 359 - 649
Target Start/End: Original strand, 23766469 - 23766762
Alignment:
Q  359 caaacaaataaatgaaaataactacaatttctctatcaagctacagattaagatgaccattaattaataatgatccatg-aagtagctaataatcagaa- 456  Q
    ||||||||||  |||||||||| ||||||||| |||||| ||  |||||||||||||| |||||||||||| |   ||  ||||| |||||||| | ||     
T  23766469 caaacaaataggtgaaaataacaacaatttctttatcaaactgtagattaagatgacctttaattaataatca---atacaagtaactaataatgaaaaa 23766565  T
Q  457 -caagtacaaaataaatatcataaacataaatt--aaaatatagttttta-gttgaatctcatgttcaagcgatatagcatcactacgacattctaacat 552  Q
     ||||||||| ||| |   |||  ||| |||||  || ||||||||| || ||||||||||||||||||  |  ||| |||||| |  ||||| ||||||    
T  23766566 acaagtacaagatacac--cattgacacaaattttaagatatagtttctatgttgaatctcatgttcaaatggcatatcatcac-attacattttaacat 23766662  T
Q  553 taagaacaaggtgatatcaaactttcaatgcagacttctaggatggattcaaactgaaa---agaaaactttacaaagccatttatagaattgtaaaaaa 649  Q
    |||||||||||||||||||| || |||| |||||| |||  | ||  ||||||||||||   ||  ||||||| | | |||| |||||||||||||||||    
T  23766663 taagaacaaggtgatatcaagctctcaacgcagacctctgaggtgctttcaaactgaaaccgagggaactttaaagaaccatctatagaattgtaaaaaa 23766762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 359 - 649
Target Start/End: Original strand, 23816317 - 23816610
Alignment:
Q  359 caaacaaataaatgaaaataactacaatttctctatcaagctacagattaagatgaccattaattaataatgatccatg-aagtagctaataatcagaa- 456  Q
    ||||||||||  |||||||||| ||||||||| |||||| ||  |||||||||||||| |||||||||||| |   ||  ||||| |||||||| | ||     
T  23816317 caaacaaataggtgaaaataacaacaatttctttatcaaactgtagattaagatgacctttaattaataatca---atacaagtaactaataatgaaaaa 23816413  T
Q  457 -caagtacaaaataaatatcataaacataaatt--aaaatatagttttta-gttgaatctcatgttcaagcgatatagcatcactacgacattctaacat 552  Q
     ||||||||| ||| |   |||  ||| |||||  || ||||||||| || ||||||||||||||||||  |  ||| |||||| |  ||||| ||||||    
T  23816414 acaagtacaagatacac--cattgacacaaattttaagatatagtttctatgttgaatctcatgttcaaatggcatatcatcac-attacattttaacat 23816510  T
Q  553 taagaacaaggtgatatcaaactttcaatgcagacttctaggatggattcaaactgaaa---agaaaactttacaaagccatttatagaattgtaaaaaa 649  Q
    |||||||||||||||||||| || |||| |||||| |||  | ||  ||||||||||||   ||  ||||||| | | |||| |||||||||||||||||    
T  23816511 taagaacaaggtgatatcaagctctcaacgcagacctctgaggtgctttcaaactgaaaccgagggaactttaaagaaccatctatagaattgtaaaaaa 23816610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 741 - 817
Target Start/End: Complemental strand, 11081881 - 11081805
Alignment:
Q  741 catgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactag 817  Q
    |||| |||||||||| |||||||||||||||||| ||||  | ||||| |||||||| | ||||||||||| |||||    
T  11081881 catgtaaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatcatcactag 11081805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 760 - 809
Target Start/End: Complemental strand, 20293044 - 20292995
Alignment:
Q  760 aatttagtccaagacgctttcatcccatattccttcattatccaaacatc 809  Q
    ||||||||||||||| |||| || |||||||||||||| |||||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatc 20292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 416 - 478
Target Start/End: Original strand, 16947834 - 16947896
Alignment:
Q  416 cattaattaataatgatccatgaagtagctaataatcagaacaagtacaaaataaatatcata 478  Q
    |||||||||| |||||||||||||||  | ||| || ||||||||||| ||||||||| ||||    
T  16947834 cattaattaacaatgatccatgaagtcaccaatgattagaacaagtacgaaataaataacata 16947896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 760 - 809
Target Start/End: Complemental strand, 20301492 - 20301443
Alignment:
Q  760 aatttagtccaagacgctttcatcccatattccttcattatccaaacatc 809  Q
    ||||||||||||||| |||| ||  ||||||||||||| |||||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaacatc 20301443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 760 - 809
Target Start/End: Complemental strand, 20305905 - 20305856
Alignment:
Q  760 aatttagtccaagacgctttcatcccatattccttcattatccaaacatc 809  Q
    ||||||||||||||| |||| || |||||||||||||| ||||| |||||    
T  20305905 aatttagtccaagactctttaattccatattccttcataatccagacatc 20305856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 760 - 809
Target Start/End: Complemental strand, 20310309 - 20310260
Alignment:
Q  760 aatttagtccaagacgctttcatcccatattccttcattatccaaacatc 809  Q
    ||||||||||||||| |||| || |||||||||||||| ||||| |||||    
T  20310309 aatttagtccaagactctttaattccatattccttcataatccagacatc 20310260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 7e-27; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 357 - 584
Target Start/End: Original strand, 1940176 - 1940399
Alignment:
Q  357 aacaaacaaataaatgaaaataactacaatttctctatcaagctacagattaagatgaccattaattaataatgatccatgaagtagctaataatcagaa 456  Q
    ||||||||||||| | |||||||||||||||||||    |||||||| ||| | |||  ||||| || | |||||||||||||||| | |||||||||||    
T  1940176 aacaaacaaataagtaaaaataactacaatttctc----aagctacatattcaaatggacattacttgacaatgatccatgaagtaaccaataatcagaa 1940271  T
Q  457 caagtacaaaataaatatcataaacataaattaaaatatagtttttagttgaatctcatgttcaagcgatatagcatcactacgacattctaacattaag 556  Q
    ||| || |||| ||||| |||||||| ||||||| |||||   | ||||| | ||||||  ||| | ||||||| | |||  | ||||| || || ||||    
T  1940272 caaataaaaaacaaataccataaacagaaattaacatataaagtctagtttagtctcattctcatgtgatatagaaccacgtctacattatagcactaag 1940371  T
Q  557 aacaaggtgatatcaaactttcaatgca 584  Q
    ||||||||||||||||||| ||||||||    
T  1940372 aacaaggtgatatcaaactctcaatgca 1940399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 422 - 580
Target Start/End: Complemental strand, 2932311 - 2932153
Alignment:
Q  422 ttaataatgatccatgaagtagctaataatcagaacaagtacaaaataaatatcataaacataaattaaaatatagtttttagttgaatctcatgttcaa 521  Q
    |||| ||| |||||||||||| | ||| |||||||||||||||||||||||||| |||| | ||||| | ||| || |||||||| | |||||   ||||    
T  2932311 ttaacaataatccatgaagtaaccaatcatcagaacaagtacaaaataaatatcctaaatagaaattgacataaaggttttagtttagtctcactctcaa 2932212  T
Q  522 gcgatatagcatcactacgacattctaacattaagaacaaggtgatatcaaactttcaa 580  Q
    | ||||||||  |||  |  ||||||| |||||||||||||||||||||||||| ||||    
T  2932211 gtgatatagccccacatctgcattctagcattaagaacaaggtgatatcaaactctcaa 2932153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 456 - 607
Target Start/End: Complemental strand, 997935 - 997784
Alignment:
Q  456 acaagtacaaaataaatatcataaacataaattaaaatatagtttttagttgaatctcatgttcaagcgatatagcatcactacgacattctaacattaa 555  Q
    ||||||||||||||||||||||||||||||||||| ||||||  | ||||| ||| ||||  ||||| || |||||| | |  | |||| ||| ||||||    
T  997935 acaagtacaaaataaatatcataaacataaattaacatataggctctagttaaatatcatactcaagtgacatagcacctcatcaacatactagcattaa 997836  T
Q  556 gaacaaggtgatatcaaactttcaatgcagacttctaggatggattcaaact 607  Q
    ||| || | ||||| ||||| |||| |||||||||| || ||| ||||||||    
T  997835 gaaaaaagggatattaaactctcaacgcagacttctgggttgggttcaaact 997784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 434 - 496
Target Start/End: Complemental strand, 1027860 - 1027798
Alignment:
Q  434 catgaagtagctaataatcagaacaagtacaaaataaatatcataaacataaattaaaatata 496  Q
    ||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  1027860 catgaagtaaccaataatgagaacaagtacaaaataaatatcataaacataaattaacatata 1027798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 415 - 591
Target Start/End: Complemental strand, 989798 - 989623
Alignment:
Q  415 ccattaattaataatgatccatgaagtagctaataatcagaacaagtacaaaataaatatcataaacataaattaaaatatagtttttagttgaatctca 514  Q
    ||||| ||||| |||||| ||||||||| | |||||||||  ||| |||||||| ||||||||| ||||||||||| |||| | || ||||| |||||||    
T  989798 ccattgattaacaatgattcatgaagtaaccaataatcagg-caaatacaaaatgaatatcatagacataaattaacatatgggttctagttaaatctca 989700  T
Q  515 tgttcaagcgatatagcatcactacgacattctaacattaagaacaaggtgatatcaaactttcaatgcagacttct 591  Q
    || |||||    || ||| | |  | |||   ||||||||| ||||||||||||| ||||| |||||||||||||||    
T  989699 tgctcaagtctcattgcaccgcatctacaagttaacattaaaaacaaggtgatattaaactctcaatgcagacttct 989623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 427 - 591
Target Start/End: Complemental strand, 1022859 - 1022695
Alignment:
Q  427 aatgatccatgaagtagctaataatcagaacaagtacaaaataaatatcataaacataaattaaaatatagtttttagttgaatctcatgttcaagcgat 526  Q
    |||||| |||||||||   |||||||||||||||| ||||||||||||||||||| |||||||| |||||| ||  ||||  || ||||| ||||| ||     
T  1022859 aatgattcatgaagtaatcaataatcagaacaagttcaaaataaatatcataaacgtaaattaacatataggttccagttagatttcatgctcaagggac 1022760  T
Q  527 atagcatcactacgacattctaacattaagaacaaggtgatatcaaactttcaatgcagacttct 591  Q
    |||||| | |  | |||  ||| ||||||| |||||| ||||| ||||| |||| ||| ||||||    
T  1022759 atagcacctcatctacaaactagcattaaggacaaggcgatattaaactctcaacgcacacttct 1022695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 456 - 607
Target Start/End: Complemental strand, 1014325 - 1014174
Alignment:
Q  456 acaagtacaaaataaatatcataaacataaattaaaatatagtttttagttgaatctcatgttcaagcgatatagcatcactacgacattctaacattaa 555  Q
    ||||||||||||||||||||||| ||||||||||| ||||||  | ||||| ||| ||||  ||||| || |||||| | |  | |||| ||| ||||||    
T  1014325 acaagtacaaaataaatatcatatacataaattaacatataggctctagttaaatatcatactcaagtgacatagcacctcatcaacatactagcattaa 1014226  T
Q  556 gaacaaggtgatatcaaactttcaatgcagacttctaggatggattcaaact 607  Q
    ||| || | ||||| ||||| |||| |||||||||| || ||| ||||||||    
T  1014225 gaaaaaagggatattaaactctcaacgcagacttctgggttgggttcaaact 1014174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 427 - 497
Target Start/End: Complemental strand, 1007831 - 1007761
Alignment:
Q  427 aatgatccatgaagtagctaataatcagaacaagtacaaaataaatatcataaacataaattaaaatatag 497  Q
    |||||| |||||||||   |||||||||||||||| ||||||||||||||||||| |||||||| ||||||    
T  1007831 aatgattcatgaagtaatcaataatcagaacaagttcaaaataaatatcataaacgtaaattaacatatag 1007761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 741 - 811
Target Start/End: Original strand, 4142117 - 4142187
Alignment:
Q  741 catgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcat 811  Q
    |||| ||||||||||||||||||||||||||||| ||||  | |||||||||||||| | |||||||||||    
T  4142117 catgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4142187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 422 - 580
Target Start/End: Original strand, 1889244 - 1889408
Alignment:
Q  422 ttaataatgatccatgaagtagctaataatcagaacaagtacaaaataaatatca------taaacataaattaaaatatagtttttagttgaatctcat 515  Q
    |||| ||| |||| ||||||| | ||||||||||||||||||||||||||||| |      |||||| ||||| | ||| || |||||| | | |||||     
T  1889244 ttaacaataatccctgaagtaaccaataatcagaacaagtacaaaataaatataaatatcctaaacaaaaattgacataaaggttttagattagtctcac 1889343  T
Q  516 gttcaagcgatatagcatcactacgacattctaacattaagaacaaggtgatatcaaactttcaa 580  Q
      ||||| || |||||| |||  | |||||||| |||||||||||||||||||||||||| ||||    
T  1889344 tctcaagtgacatagcaccacatctacattctagcattaagaacaaggtgatatcaaactctcaa 1889408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 741 - 851
Target Start/End: Complemental strand, 3754668 - 3754558
Alignment:
Q  741 catgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaatccagcacaaacaattcccg 840  Q
    |||| |||||||||| |||||||||||||||||| ||||  | |||||||||||||| | ||||||||||  || |||| ||  |||||| |||| ||      
T  3754668 catgcaaggaatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatcaacaccagaagtcacgcacaagcaatccctc 3754569  T
Q  841 aaaacactcaa 851  Q
    |||||||||||    
T  3754568 aaaacactcaa 3754558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 550 - 590
Target Start/End: Complemental strand, 956652 - 956612
Alignment:
Q  550 cattaagaacaaggtgatatcaaactttcaatgcagacttc 590  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  956652 cattaagaacaaggtgatatcaaactttcaaagcagacttc 956612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 751 - 811
Target Start/End: Original strand, 4157937 - 4157997
Alignment:
Q  751 atagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcat 811  Q
    |||||||||||||||||||||||| ||||  | |||||||||||||| | |||||||||||    
T  4157937 atagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4157997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 457 - 589
Target Start/End: Original strand, 7431747 - 7431879
Alignment:
Q  457 caagtacaaaataaatatcataaacataaattaaaatatagtttttagttgaatctcatgttcaagcgatatagcatcactacgacattctaacattaag 556  Q
    |||||| |||||||||| |||||||||||||||| | |||| || |  |||||||||||| | ||| |||||||||   |  | |||| ||| |  ||||    
T  7431747 caagtaaaaaataaatagcataaacataaattaacacataggttatttttgaatctcatgcttaagtgatatagcacagcatctacatcctagcggtaag 7431846  T
Q  557 aacaaggtgatatcaaactttcaatgcagactt 589  Q
    ||||||| ||||||||||| |||||||| ||||    
T  7431847 aacaaggagatatcaaactctcaatgcaaactt 7431879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 750 - 865
Target Start/End: Complemental strand, 956440 - 956325
Alignment:
Q  750 aatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaatccagcacaaacaattcccgaaaacactc 849  Q
    |||| |||||||||||  ||||||| ||||  | |||||||||||||| |||||||||||   || | |||||  |||||| |||| || ||||||||||    
T  956440 aataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacatcgcaaccaaaaatcatgcacaagcaatccctgaaaacactc 956341  T
Q  850 aagtgcaaagtacgtg 865  Q
    |||| ||||| |||||    
T  956340 aagttcaaagaacgtg 956325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 746 - 852
Target Start/End: Original strand, 2686300 - 2686409
Alignment:
Q  746 aaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattat---ccaaacatcattactagaaatccagcacaaacaattcccgaa 842  Q
    |||||||||||||||||||| |||||||| ||||  | |||||||||||||| ||   ||||||||||| || | | ||| |||||||||||| ||  ||    
T  2686300 aaggaatagtgaacaatttattccaagactctttttttccatattccttcataataacccaaacatcatcaccacagatcaagcacaaacaatccctcaa 2686399  T
Q  843 aacactcaag 852  Q
    ||||| ||||    
T  2686400 aacacccaag 2686409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 478 - 580
Target Start/End: Original strand, 1890772 - 1890874
Alignment:
Q  478 aaacataaattaaaatatagtttttagttgaatctcatgttcaagcgatatagcatcactacgacattctaacattaagaacaaggtgatatcaaacttt 577  Q
    ||||| ||||| |||||||| |||||||| |||||||   ||||| || |||| | |||  | |||||||| |||||||||||||| ||||||||||| |    
T  1890772 aaacagaaattgaaatataggttttagtttaatctcactctcaagtgacatagtaccacatctacattctagcattaagaacaaggcgatatcaaactct 1890871  T
Q  578 caa 580  Q
    |||    
T  1890872 caa 1890874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 753 - 811
Target Start/End: Original strand, 2696727 - 2696785
Alignment:
Q  753 agtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcat 811  Q
    ||||||||||||| |||||||| ||||  | |||||||||||||| |||||||||||||    
T  2696727 agtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatcat 2696785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 750 - 811
Target Start/End: Complemental strand, 1007520 - 1007459
Alignment:
Q  750 aatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcat 811  Q
    ||||||||||||||||||||| ||| | ||  | |||||||||||||||| |||||||||||    
T  1007520 aatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatcat 1007459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 750 - 811
Target Start/End: Complemental strand, 1022548 - 1022487
Alignment:
Q  750 aatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcat 811  Q
    ||||||||||||||||||||| ||| | ||  | |||||||||||||||| |||||||||||    
T  1022548 aatagtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatcat 1022487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 590
Target Start/End: Original strand, 1936757 - 1936806
Alignment:
Q  541 acattctaacattaagaacaaggtgatatcaaactttcaatgcagacttc 590  Q
    |||||||| |||||| ||||||||||||||||||| |||| |||||||||    
T  1936757 acattctagcattaaaaacaaggtgatatcaaactctcaacgcagacttc 1936806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 746 - 811
Target Start/End: Complemental strand, 3746071 - 3746006
Alignment:
Q  746 aaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcat 811  Q
    |||||||||| |||||||||||||||||| ||| | |  ||||||||||||| ||||||| |||||    
T  3746071 aaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcat 3746006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 591
Target Start/End: Complemental strand, 12133357 - 12133312
Alignment:
Q  546 ctaacattaagaacaaggtgatatcaaactttcaatgcagacttct 591  Q
    |||||||||||||||||||||||||||||| | | |||||||||||    
T  12133357 ctaacattaagaacaaggtgatatcaaactcttagtgcagacttct 12133312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 740 - 820
Target Start/End: Complemental strand, 989465 - 989385
Alignment:
Q  740 gcatgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaa 820  Q
    ||||| ||| ||||||||||||||||||||||||| ||||  | || || || ||||||| ||||||||||| || |||||    
T  989465 gcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcaccagaaa 989385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 580
Target Start/End: Original strand, 1897448 - 1897487
Alignment:
Q  541 acattctaacattaagaacaaggtgatatcaaactttcaa 580  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  1897448 acattctagcattaagaacaaggtgatatcaaactctcaa 1897487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 580
Target Start/End: Original strand, 1906894 - 1906933
Alignment:
Q  541 acattctaacattaagaacaaggtgatatcaaactttcaa 580  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  1906894 acattctagcattaagaacaaggtgatatcaaactctcaa 1906933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 580
Target Start/End: Original strand, 1930946 - 1930985
Alignment:
Q  541 acattctaacattaagaacaaggtgatatcaaactttcaa 580  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  1930946 acattctagcattaagaacaaggtgatatcaaactctcaa 1930985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 580
Target Start/End: Complemental strand, 12218319 - 12218280
Alignment:
Q  541 acattctaacattaagaacaaggtgatatcaaactttcaa 580  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  12218319 acatcctaacattaagaacaaggtgatatcaaactctcaa 12218280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 758 - 809
Target Start/End: Original strand, 37753345 - 37753396
Alignment:
Q  758 acaatttagtccaagacgctttcatcccatattccttcattatccaaacatc 809  Q
    ||||||||||||||||| ||||| | |||||||||| ||| |||||||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaacatc 37753396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 455 - 497
Target Start/End: Original strand, 802884 - 802926
Alignment:
Q  455 aacaagtacaaaataaatatcataaacataaattaaaatatag 497  Q
    |||||||| |||| ||||| |||||||||||||||||||||||    
T  802884 aacaagtaaaaaagaaataacataaacataaattaaaatatag 802926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 753 - 835
Target Start/End: Original strand, 803213 - 803295
Alignment:
Q  753 agtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaatccagcacaaacaat 835  Q
    ||||||||| |||||||||||| ||||  | |||||||| ||||| | ||||||||||| || |||||||  |||||| ||||    
T  803213 agtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcaccagaaatcatgcacaagcaat 803295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 357 - 391
Target Start/End: Complemental strand, 900409 - 900375
Alignment:
Q  357 aacaaacaaataaatgaaaataactacaatttctc 391  Q
    ||||||||||||| |||||||||||||||||||||    
T  900409 aacaaacaaataattgaaaataactacaatttctc 900375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 747 - 809
Target Start/End: Original strand, 2644351 - 2644413
Alignment:
Q  747 aggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatc 809  Q
    |||||||||| ||||||||||||||||| |||   | ||||| |||||||| |||||||||||    
T  2644351 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2644413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 747 - 809
Target Start/End: Original strand, 2659141 - 2659203
Alignment:
Q  747 aggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatc 809  Q
    |||||||||| ||||||||||||||||| |||   | ||||| |||||||| |||||||||||    
T  2659141 aggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2659203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 747 - 809
Target Start/End: Original strand, 7334228 - 7334290
Alignment:
Q  747 aggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatc 809  Q
    |||||||||| ||||||||||||||||| ||||  | || || |||||||| |||||||||||    
T  7334228 aggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatc 7334290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 541 - 575
Target Start/End: Original strand, 7427364 - 7427398
Alignment:
Q  541 acattctaacattaagaacaaggtgatatcaaact 575  Q
    |||| ||||||||||||||||||||||||||||||    
T  7427364 acatcctaacattaagaacaaggtgatatcaaact 7427398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 549 - 590
Target Start/End: Original strand, 783590 - 783631
Alignment:
Q  549 acattaagaacaaggtgatatcaaactttcaatgcagacttc 590  Q
    ||||||||||||||||||||||||||| |||| | |||||||    
T  783590 acattaagaacaaggtgatatcaaactctcaacgtagacttc 783631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 802977 - 803018
Alignment:
Q  550 cattaagaacaaggtgatatcaaactttcaatgcagacttct 591  Q
    ||||||||||||||||||||||| || |||||||||| ||||    
T  802977 cattaagaacaaggtgatatcaagctctcaatgcagatttct 803018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 811
Target Start/End: Original strand, 2678387 - 2678452
Alignment:
Q  746 aaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcat 811  Q
    ||||||||||||||||||||||||| ||| ||||  | |||||||  ||||| | |||||||||||    
T  2678387 aaggaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcat 2678452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 760 - 809
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  760 aatttagtccaagacgctttcatcccatattccttcattatccaaacatc 809  Q
    ||||||||||||||| ||||  | |||||||||||||| |||||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 434 - 497
Target Start/End: Original strand, 22671811 - 22671874
Alignment:
Q  434 catgaagtagctaataatcagaacaagtacaaaataaatatcataaacataaattaaaatatag 497  Q
    ||||||||| | |||||| ||||||| |||||||||||||||||||||||||||||| ||||||    
T  22671811 catgaagtaaccaataatgagaacaattacaaaataaatatcataaacataaattaacatatag 22671874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 753 - 821
Target Start/End: Original strand, 20019767 - 20019835
Alignment:
Q  753 agtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaat 821  Q
    |||||||||||||||||||||| |||  || |||||||||||||| | |||||||||||||| ||||||    
T  20019767 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaat 20019835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 462 - 595
Target Start/End: Original strand, 20019473 - 20019600
Alignment:
Q  462 acaaaataaatatcataaacataaattaaaatatagtttttagttgaatctcatgttcaagcgatatagcatcactacgacattctaacattaagaacaa 561  Q
    |||||||||| | ||| ||||||||||||||||||| || ||||| ||||||||| | ||| || |||||      || |||| ||| |||||| |||||    
T  20019473 acaaaataaaaaacattaacataaattaaaatataggttgtagttaaatctcatgctgaagtgacatagc------acaacatcctagcattaaaaacaa 20019566  T
Q  562 ggtgatatcaaactttcaatgcagacttctagga 595  Q
    |||||||||||||| ||||  || ||||||||||    
T  20019567 ggtgatatcaaactctcaacacatacttctagga 20019600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 753 - 821
Target Start/End: Original strand, 20016180 - 20016249
Alignment:
Q  753 agtgaacaatttagtccaagacgctttcatcccatattccttcattatcc-aaacatcattactagaaat 821  Q
    |||||||||||||||||||||| |||  || |||||||||||||| |||| |||||||||||| ||||||    
T  20016180 agtgaacaatttagtccaagactcttgaattccatattccttcatgatccaaaacatcattaccagaaat 20016249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 736 - 863
Target Start/End: Original strand, 22672105 - 22672232
Alignment:
Q  736 gatggcatgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaatccagcacaaacaat 835  Q
    ||||||||| ||| ||||||||||||||||||||||||  | ||  | |||||||||||||||| |||||| || | || ||||| | ||  ||| ||||    
T  22672105 gatggcatgtaagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaacgtcgtcaccagaaaacaagatcaagcaat 22672204  T
Q  836 tcccgaaaacactcaagtgcaaagtacg 863  Q
     || || |||||||||| ||||| ||||    
T  22672205 ccctgagaacactcaagagcaaaatacg 22672232  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 503 - 591
Target Start/End: Complemental strand, 33038522 - 33038434
Alignment:
Q  503 agttgaatctcatgttcaagcgatatagcatcactacgacattctaacattaagaacaaggtgatatcaaactttcaatgcagacttct 591  Q
    |||| ||||||||||||||| || ||| |||  |  | |||| |||||||||||||||||||||||||| |||||||||| ||||||||    
T  33038522 agtttaatctcatgttcaagtgacatatcatagcatctacatcctaacattaagaacaaggtgatatcagactttcaatgtagacttct 33038434  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 36577856 - 36577819
Alignment:
Q  356 taacaaacaaataaatgaaaataactacaatttctcta 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36577856 taacaaacaaataaatgaaaataactacaatttctcta 36577819  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 591
Target Start/End: Complemental strand, 33026944 - 33026902
Alignment:
Q  549 acattaagaacaaggtgatatcaaactttcaatgcagacttct 591  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  33026944 acattaagaacaaggtgatatcagactttcaatgtagacttct 33026902  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 546 - 591
Target Start/End: Original strand, 24417244 - 24417289
Alignment:
Q  546 ctaacattaagaacaaggtgatatcaaactttcaatgcagacttct 591  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||    
T  24417244 ctaacattaagaacaaggtgatatcagactttcaatgtagacttct 24417289  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 580
Target Start/End: Original strand, 9819606 - 9819645
Alignment:
Q  541 acattctaacattaagaacaaggtgatatcaaactttcaa 580  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  9819606 acatactaacattaagaacaaggtgatatcaaactctcaa 9819645  T

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Target: scaffold0044 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 541 - 589
Target Start/End: Complemental strand, 89435 - 89387
Alignment:
Q  541 acattctaacattaagaacaaggtgatatcaaactttcaatgcagactt 589  Q
    |||| ||||| |||||||||||||||||||||||| |||||| ||||||    
T  89435 acatcctaacgttaagaacaaggtgatatcaaactctcaatgtagactt 89387  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 741 - 810
Target Start/End: Original strand, 51381438 - 51381507
Alignment:
Q  741 catgaaaggaatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatca 810  Q
    |||| |||||||| |||||||||||||||||||| |||   | |||||||| ||||| ||||||| ||||    
T  51381438 catgtaaggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatca 51381507  T

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