View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2479_high_120 (Length: 248)

Name: NF2479_high_120
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2479_high_120
NF2479_high_120
[»] chr8 (14 HSPs)
chr8 (8-230)||(37929089-37929311)
chr8 (19-230)||(31686323-31686534)
chr8 (25-158)||(8462480-8462613)
chr8 (60-140)||(38685794-38685874)
chr8 (34-155)||(5048494-5048615)
chr8 (60-125)||(33191203-33191268)
chr8 (25-142)||(41255020-41255137)
chr8 (60-142)||(10616938-10617020)
chr8 (25-158)||(29216938-29217070)
chr8 (60-119)||(7179036-7179095)
chr8 (25-160)||(39435419-39435553)
chr8 (60-140)||(38233236-38233316)
chr8 (60-132)||(21523894-21523966)
chr8 (55-122)||(33282844-33282911)
[»] chr7 (14 HSPs)
chr7 (19-230)||(38153898-38154109)
chr7 (40-158)||(34237168-34237286)
chr7 (28-160)||(17116368-17116500)
chr7 (60-142)||(40616717-40616799)
chr7 (25-116)||(27854881-27854972)
chr7 (25-155)||(41529389-41529519)
chr7 (25-142)||(47543425-47543542)
chr7 (39-142)||(42017800-42017903)
chr7 (25-119)||(12092675-12092769)
chr7 (60-122)||(38342998-38343060)
chr7 (19-97)||(4997971-4998049)
chr7 (60-142)||(26569741-26569823)
chr7 (58-116)||(27076604-27076662)
chr7 (58-116)||(27201639-27201697)
[»] chr1 (22 HSPs)
chr1 (7-229)||(5958223-5958444)
chr1 (24-154)||(34703453-34703583)
chr1 (28-158)||(44675097-44675227)
chr1 (25-122)||(12688177-12688274)
chr1 (40-152)||(36098593-36098705)
chr1 (24-147)||(6723689-6723812)
chr1 (60-122)||(5411773-5411835)
chr1 (24-149)||(10686161-10686286)
chr1 (60-140)||(28442130-28442210)
chr1 (43-142)||(26260768-26260867)
chr1 (40-125)||(4889464-4889549)
chr1 (60-116)||(45718367-45718423)
chr1 (60-158)||(9484879-9484977)
chr1 (24-118)||(27568381-27568475)
chr1 (60-122)||(48973685-48973747)
chr1 (60-125)||(28400529-28400594)
chr1 (34-158)||(25392289-25392413)
chr1 (84-123)||(52251399-52251438)
chr1 (64-140)||(50039686-50039759)
chr1 (55-119)||(23997141-23997205)
chr1 (58-126)||(42450626-42450694)
chr1 (83-119)||(52626563-52626599)
[»] chr2 (21 HSPs)
chr2 (19-229)||(33645730-33645942)
chr2 (28-158)||(27009200-27009330)
chr2 (60-142)||(841531-841613)
chr2 (28-158)||(9840768-9840898)
chr2 (28-154)||(30505717-30505843)
chr2 (24-154)||(39117416-39117546)
chr2 (24-153)||(27708158-27708287)
chr2 (25-125)||(24739816-24739916)
chr2 (65-153)||(37738057-37738145)
chr2 (25-155)||(36176612-36176741)
chr2 (39-125)||(18766683-18766769)
chr2 (81-142)||(40426909-40426970)
chr2 (28-122)||(31640241-31640335)
chr2 (24-118)||(44735982-44736076)
chr2 (60-140)||(1997682-1997762)
chr2 (83-142)||(8090525-8090584)
chr2 (63-122)||(38409024-38409083)
chr2 (60-119)||(45131132-45131191)
chr2 (60-126)||(9933090-9933156)
chr2 (84-150)||(35590281-35590347)
chr2 (58-126)||(18948827-18948895)
[»] chr4 (23 HSPs)
chr4 (25-142)||(10552637-10552754)
chr4 (28-157)||(25130409-25130538)
chr4 (58-142)||(13137112-13137196)
chr4 (55-155)||(29969873-29969973)
chr4 (25-155)||(20510392-20510522)
chr4 (24-125)||(9831382-9831483)
chr4 (58-125)||(40153925-40153992)
chr4 (60-153)||(30972360-30972453)
chr4 (25-140)||(11131172-11131287)
chr4 (60-158)||(27269973-27270071)
chr4 (60-142)||(42527325-42527407)
chr4 (24-158)||(52577982-52578116)
chr4 (82-142)||(54870801-54870861)
chr4 (25-158)||(22653286-22653419)
chr4 (60-140)||(30739504-30739584)
chr4 (60-147)||(48336994-48337081)
chr4 (60-158)||(21204865-21204963)
chr4 (72-126)||(37772958-37773012)
chr4 (60-140)||(18921946-18922026)
chr4 (55-122)||(12115024-12115091)
chr4 (60-158)||(29521656-29521754)
chr4 (34-124)||(43001717-43001807)
chr4 (61-122)||(37207398-37207459)
[»] chr6 (21 HSPs)
chr6 (26-142)||(32533047-32533163)
chr6 (25-158)||(2682761-2682894)
chr6 (60-142)||(18672069-18672150)
chr6 (29-153)||(12688190-12688314)
chr6 (24-160)||(9907156-9907292)
chr6 (60-119)||(11298598-11298657)
chr6 (60-138)||(15117238-15117316)
chr6 (28-158)||(34714917-34715047)
chr6 (25-122)||(17292769-17292866)
chr6 (25-122)||(18015748-18015845)
chr6 (25-153)||(27105270-27105398)
chr6 (25-153)||(27147079-27147207)
chr6 (55-122)||(11324496-11324563)
chr6 (24-126)||(22469420-22469522)
chr6 (24-142)||(7824120-7824238)
chr6 (60-119)||(29321330-29321389)
chr6 (29-159)||(7155422-7155552)
chr6 (60-152)||(14215993-14216085)
chr6 (74-119)||(10944161-10944206)
chr6 (25-122)||(18673363-18673460)
chr6 (82-142)||(5667348-5667408)
[»] chr5 (19 HSPs)
chr5 (24-142)||(27482654-27482772)
chr5 (25-158)||(19314970-19315103)
chr5 (34-157)||(25326131-25326254)
chr5 (25-149)||(12831489-12831613)
chr5 (25-149)||(12863464-12863588)
chr5 (25-140)||(7961129-7961244)
chr5 (39-158)||(26778687-26778805)
chr5 (60-131)||(39839938-39840009)
chr5 (55-122)||(29994647-29994714)
chr5 (40-125)||(4396672-4396757)
chr5 (60-157)||(11305855-11305951)
chr5 (60-140)||(7465257-7465337)
chr5 (55-122)||(32252148-32252215)
chr5 (59-149)||(16610601-16610691)
chr5 (82-122)||(21042005-21042045)
chr5 (97-142)||(29651782-29651827)
chr5 (25-142)||(31706408-31706525)
chr5 (60-117)||(32017992-32018049)
chr5 (55-119)||(18967882-18967946)
[»] chr3 (18 HSPs)
chr3 (26-155)||(33692870-33692999)
chr3 (60-119)||(29542393-29542452)
chr3 (60-119)||(41878726-41878785)
chr3 (60-116)||(19979287-19979343)
chr3 (24-119)||(25845646-25845741)
chr3 (59-142)||(26285215-26285298)
chr3 (60-125)||(42806289-42806354)
chr3 (26-142)||(4740999-4741115)
chr3 (24-140)||(20017407-20017523)
chr3 (29-157)||(25408767-25408895)
chr3 (55-115)||(37537238-37537298)
chr3 (60-119)||(22534037-22534096)
chr3 (55-122)||(47161017-47161084)
chr3 (60-122)||(6925985-6926047)
chr3 (60-142)||(53876864-53876946)
chr3 (25-140)||(6894192-6894307)
chr3 (53-122)||(3857614-3857683)
chr3 (26-118)||(14788867-14788959)
[»] scaffold0225 (1 HSPs)
scaffold0225 (24-122)||(6503-6601)
[»] scaffold0047 (1 HSPs)
scaffold0047 (24-140)||(64272-64388)
[»] scaffold0204 (1 HSPs)
scaffold0204 (60-147)||(24516-24603)
[»] scaffold0003 (1 HSPs)
scaffold0003 (39-124)||(290999-291084)
[»] scaffold0795 (1 HSPs)
scaffold0795 (55-119)||(2187-2251)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 37929089 - 37929311
Alignment:
Q  8 aaatttgtttcataagtcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttg 107  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37929089 aaatttgcttaataagtcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttg 37929188  T
Q  108 gtggcttagtccgttcaccttgttaggcataggctgatagttatttcttttttgcttcgttatgtacagtttcctcttataaatattgtatcgacattgt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||    
T  37929189 gtggcttagtccgttcaccttgttaggcataggctgatagttatttcttttttgcttcgttatgtacagtttcctcttgtaaatattgttttgacattgt 37929288  T
Q  208 ttgtctttcctatgtacaccttg 230  Q
    |||||||||||||||||||||||    
T  37929289 ttgtctttcctatgtacaccttg 37929311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 31686534 - 31686323
Alignment:
Q  19 ataagtcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtc 118  Q
    |||||||||||||||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |||||||||    
T  31686534 ataagtcaggtggtcgatagaattaagtctcgcgcttttaggtggttgaaggagaaatttcctactcttccctttaactaccatgggtggcggcttagtc 31686435  T
Q  119 cgttcaccttgttaggcataggctgatagttatttcttttttgcttcgttatgtacagtttcctcttataaatattgtatcgacattgtttgtctttcct 218  Q
    ||||||||||||||| | | |||  |||||||||||||||||| ||  || |||||||||||||||| |||||||||| ||||| || ||||||||||||    
T  31686434 cgttcaccttgttagacgttggcctatagttatttcttttttgattgtttttgtacagtttcctcttgtaaatattgtttcgacgttatttgtctttcct 31686335  T
Q  219 atgtacaccttg 230  Q
    ||||||||||||    
T  31686334 atgtacaccttg 31686323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 8462613 - 8462480
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||| ||||||||| ||| |||| | ||||||||||| ||||||| || |||||||||| || |||||||||||||||||||||| ||| |    
T  8462613 caggtggttgataagattaagtcactcacattcatgtggttgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggcttagtctgttta 8462514  T
Q  125 ccttgttaggcataggctgatagttatttctttt 158  Q
    || || |   |||||||| || ||||||||||||    
T  8462513 ccatgatgaacataggctaattgttatttctttt 8462480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 38685794 - 38685874
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcatagg 140  Q
    ||||| ||||||||| | | |||||||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||    
T  38685794 gtggtcgaaggtgaagtatgctactcttccctttaactatcatggttggtggattagtccgttcactttattaggcgtagg 38685874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 5048494 - 5048615
Alignment:
Q  34 gataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttag 133  Q
    |||| ||||||| | ||| | |||| ||||||||||||||||||   ||| |||||||| |||| |||||||||||||||||||||||||||| |  | |    
T  5048494 gataagattaagcccctctcttttatgtggttgaaggtgaaattaaatacgcttcccttcaactttcatggttggtggcttagtccgttcaccatactgg 5048593  T
Q  134 gcataggctgatagttatttct 155  Q
    ||||||| | |||||| |||||    
T  5048594 gcataggttaatagttttttct 5048615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 33191268 - 33191203
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcac 125  Q
    |||||||||| ||||||||  |||||||||||| || |||||||||||||||||||||||||||||    
T  33191268 gtggttgaagttgaaatttgatactcttcccttcaattatcatggttggtggcttagtccgttcac 33191203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 41255137 - 41255020
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| ||| |||||||||  ||  |||| | |||||||||||| || | | ||  ||||||||||||||||||||||||||||||||||||||||     
T  41255137 caggtggtggatcggattaagttactaacattcaagtggttgaaggttaactatgcttatcttccctttaactatcatggttggtggcttagtccgttcc 41255038  T
Q  125 ccttgttaggcataggct 142  Q
    | || |||| ||||||||    
T  41255037 ctttattagacataggct 41255020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 10616938 - 10617020
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggct 142  Q
    ||||||| ||||||| ||| ||||| |||| || |||||||||||||||||||||||| ||||| | || |||||||||||||    
T  10616938 gtggttggaggtgaagtttgctactattcctttcaactatcatggttggtggcttagttcgttcgctttattaggcataggct 10617020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 29216938 - 29217070
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||| |||||| | |||||| |||| ||||||||||||||||||| || ||||||||||  | |   ||||| ||| |||||||||||| |    
T  29216938 caggtggtggataagattaaatatctcgcgtttatgtggttgaaggtgaaatttgcttctcttcccttccattgctatggtaggt-gcttagtccgttta 29217036  T
Q  125 ccttgttaggcataggctgatagttatttctttt 158  Q
    || || | | |||||||| |||||||||||||||    
T  29217037 ccatgctggacataggctaatagttatttctttt 29217070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 7179095 - 7179036
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 119  Q
    ||||||||||||||| |||   |||||||||||||||||||||| |||||||||||||||    
T  7179095 gtggttgaaggtgaagtttgtaactcttccctttaactatcatgattggtggcttagtcc 7179036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 39435553 - 39435419
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||| ||||||||| ||||  || | ||||||||||| ||||||| || ||||| ||||| | ||||||||||||||| | |||| |||||    
T  39435553 caggtggttgataagattaagtcactcgagttcatgtggttgaaggcgaaatttgcttctctt-cctttcattatcatggttggtggttgagtctgttca 39435455  T
Q  125 ccttgttaggcataggctgatagttatttctttttt 160  Q
    ||||  | | |||||||| |||||| ||| ||||||    
T  39435454 cctttctggacataggctaatagttttttttttttt 39435419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 38233236 - 38233316
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcatagg 140  Q
    ||||||||||||||| | | |  ||||||||||||| |||||||||||||||  |||||| ||||| || |||||||||||    
T  38233236 gtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggtctagtcctttcactttattaggcatagg 38233316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 21523894 - 21523966
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgtta 132  Q
    ||||||||| | ||| |||||  |||||||||| ||||||||||||||||| |||||| | |||||| |||||    
T  21523894 gtggttgaaagcgaagtttccatctcttcccttcaactatcatggttggtgacttagttccttcaccatgtta 21523966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 33282844 - 33282911
Alignment:
Q  55 tttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    ||||||||||||||||  |||||| || |||| ||  | || ||||||||||||||||||||||||||    
T  33282844 tttaggtggttgaaggaaaaatttgcttctctccctctcaattatcatggttggtggcttagtccgtt 33282911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 38153898 - 38154109
Alignment:
Q  19 ataagtcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtc 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  38153898 ataagtcaggtggtcgataggattaagtctctcgcttttaggtggttgaaggtgaaatttcctactcttccctttaactaccatagatggtggcttagtc 38153997  T
Q  119 cgttcaccttgttaggcataggctgatagttatttcttttttgcttcgttatgtacagtttcctcttataaatattgtatcgacattgtttgtctttcct 218  Q
     ||||||||||||||||||||| |||||||||||||||||||| ||  || |||||||||||||||| |||||||||| ||||| ||||||||| |||||    
T  38153998 tgttcaccttgttaggcataggttgatagttatttcttttttgtttgtttttgtacagtttcctcttgtaaatattgtttcgacgttgtttgtccttcct 38154097  T
Q  219 atgtacaccttg 230  Q
    ||||||||||||    
T  38154098 atgtacaccttg 38154109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 34237168 - 34237286
Alignment:
Q  40 attaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcatag 139  Q
    |||||||||||||  ||| |||||||||||| |||||||| || | ||||||| || ||||||||||||||||||||||| |||||| |||| |||||||    
T  34237168 attaagtctctcgttttttggtggttgaaggcgaaatttcatattattcccttcaattatcatggttggtggcttagtcctttcaccatgttgggcatag 34237267  T
Q  140 gctgatagttatttctttt 158  Q
    ||| | | |||||||||||    
T  34237268 gctaaaaattatttctttt 34237286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 17116500 - 17116368
Alignment:
Q  28 gtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcacct 127  Q
    ||||| |||| ||||||||| |||||||||| ||||||||||| ||||| | || |||||||||| |  |||||||||||||||||||||| ||| |||     
T  17116500 gtggttgataagattaagtcactcgcatttatgtggttgaaggcgaaatatgcttctcttcccttcagttatcatggttggtggcttagtctgtttacca 17116401  T
Q  128 tgttaggcataggctgatagttatttctttttt 160  Q
    | || || ||| ||| |||||||||||||||||    
T  17116400 tattgggtataagctaatagttatttctttttt 17116368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 40616799 - 40616717
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggct 142  Q
    ||||||||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||| ||  ||||||||||||    
T  40616799 gtggttgaaggtgaagtatgctactcttccctttaactatcttggttggtggcttagtccgttcactttactaggcataggct 40616717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 27854881 - 27854972
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttag 116  Q
    |||||||| |||||||||||||   |  |||| | ||||||||||||||| | | |||| ||||||||||||||||||||||||||||||||    
T  27854881 caggtggtggataggattaagttgttaacattcaagtggttgaaggtgaagtatgctacccttccctttaactatcatggttggtggcttag 27854972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 41529389 - 41529519
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||| |||||||||  || | |||| |||||||||| ||||||||   || |||||||| || | |||||||||||| |||||||||||||    
T  41529389 caggtggttgataagattaagtccatctcttttatgtggttgaagatgaaatttaacacgcttcccttcaattttcatggttggtgacttagtccgttca 41529488  T
Q  125 ccttgttaggcataggctgatagttatttct 155  Q
    || || | |||||||| | |||||| |||||    
T  41529489 ccatgctgggcataggttaatagttttttct 41529519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 47543425 - 47543542
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    ||||||||||| | ||||||||| || || |||| ||||||||||  ||| |||  | |||||||||| || |||||||| || |||||||||||||| |    
T  47543425 caggtggtcgacaagattaagtcgcttgcttttacgtggttgaagacgaagtttagttctcttcccttcaattatcatgggtgatggcttagtccgttta 47543524  T
Q  125 ccttgttaggcataggct 142  Q
    || | |||||||| ||||    
T  47543525 ccattttaggcattggct 47543542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 42017800 - 42017903
Alignment:
Q  39 gattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcata 138  Q
    ||||||||| ||  ||| || ||||||||||| |||| ||||||  ||  | || ||||||||||| ||||||||||||||||||||  |||| ||||||    
T  42017800 gattaagtcactttcatatatgtggttgaaggcgaaacttcctaagctctctttcaactatcatggatggtggcttagtccgttcactatgttgggcata 42017899  T
Q  139 ggct 142  Q
    ||||    
T  42017900 ggct 42017903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 12092675 - 12092769
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 119  Q
    |||||||| |||| ||||||||| ||  | || | ||||||||||| ||||||| |  |||||||||| ||||||||||| | ||||||||||||    
T  12092675 caggtggtagataagattaagtcactttccttcatgtggttgaaggcgaaattttcctctcttcccttaaactatcatggatagtggcttagtcc 12092769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 38342998 - 38343060
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    |||||||||||||||  ||   ||||||||||||||||||||||||||||| |||| ||||||    
T  38342998 gtggttgaaggtgaagcttgtaactcttccctttaactatcatggttggtgacttaatccgtt 38343060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 4998049 - 4997971
Alignment:
Q  19 ataagtcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaact 97  Q
    |||| ||||||||| |||| ||||||||| ||| | |||| ||||||||||| ||||||| ||||| ||| ||| ||||    
T  4998049 ataattcaggtggtggataagattaagtccctcacttttatgtggttgaaggcgaaatttactactattctcttcaact 4997971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 26569741 - 26569823
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggct 142  Q
    ||||||||||| |||| || || |||||||||| || |||||||| ||||||||  ||||||||||  |||| ||||| ||||    
T  26569741 gtggttgaaggcgaaacttgcttctcttcccttcaattatcatggatggtggctatgtccgttcactatgttgggcattggct 26569823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 27076604 - 27076662
Alignment:
Q  58 aggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttag 116  Q
    ||||||| ||||| ||| |||||  || ||||||| |||||||||||||||||||||||    
T  27076604 aggtggtagaaggcgaagtttccatctattcccttcaactatcatggttggtggcttag 27076662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 27201697 - 27201639
Alignment:
Q  58 aggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttag 116  Q
    ||||||| ||||| ||| |||||  || ||||||| |||||||||||||||||||||||    
T  27201697 aggtggtagaaggcgaagtttccatctattcccttcaactatcatggttggtggcttag 27201639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 5958444 - 5958223
Alignment:
Q  7 aaaatttgtttcataagtcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggtt 106  Q
    |||||||| || |||| ||||||| |||||||||||||||||||||  |||||||||||||||||||||||| ||||| ||||||||||||||||||| |    
T  5958444 aaaatttgcttaataaatcaggtgatcgataggattaagtctctcgtttttaggtggttgaaggtgaaatttgctacttttccctttaactatcatggat 5958345  T
Q  107 ggtggcttagtccgttcaccttgttaggcataggctgatagttatttcttttttgcttcgttatgtacagtttcctcttataaatattgtatcgacattg 206  Q
    ||||||||| | | || ||||||||||||||||||||||| |||||||||||||  |   || |||||||||| ||||| |||||| ||| ||||| |||    
T  5958344 ggtggcttaattcatttaccttgttaggcataggctgataattatttctttttt-atgatttttgtacagttttctcttgtaaatactgtttcgactttg 5958246  T
Q  207 tttgtctttcctatgtacacctt 229  Q
    |||||||||||||| ||||||||    
T  5958245 tttgtctttcctatatacacctt 5958223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 34703583 - 34703453
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttc 123  Q
    ||||||||| |||| ||||||||| ||| | |||| ||||||||||| ||||| | | |||||||||||||||| ||||||||||||||| ||| |||||    
T  34703583 tcaggtggttgataagattaagtccctcacttttatgtggttgaaggcgaaatatgcaactcttccctttaactttcatggttggtggctaagttcgttc 34703484  T
Q  124 accttgttaggcataggctgatagttatttc 154  Q
    ||| |||| | |||||||| |||||||||||    
T  34703483 accatgttggacataggctaatagttatttc 34703453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 44675097 - 44675227
Alignment:
Q  28 gtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcacct 127  Q
    ||||| |||| ||||||| | || ||||| | ||||||||||| ||||||| || | |||||||| || |||||||||||||||||||||||||| | |     
T  44675097 gtggttgataagattaagccacttgcattcatgtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgtttatca 44675196  T
Q  128 tgttaggcataggctgatagttatttctttt 158  Q
    |||| ||||||| || |||||||||||||||    
T  44675197 tgttgggcatagactaatagttatttctttt 44675227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 12688177 - 12688274
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    |||||||| |||| ||||||||  ||  | |||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  12688177 caggtggtggataagattaagttgctaacttttaagtggttgaaggtgaagtttccaactcttccctttaactatcatggatggtggcttagtccgtt 12688274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 36098705 - 36098593
Alignment:
Q  40 attaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcatag 139  Q
    |||||||||||||| ||||||||| ||||||  |||||   ||| |||||||| || |||||||| ||||||||||||||||||||| |||| |||||||    
T  36098705 attaagtctctcgcctttaggtggctgaaggcaaaattcattacacttcccttcaattatcatggctggtggcttagtccgttcaccatgttgggcatag 36098606  T
Q  140 gctgatagttatt 152  Q
    ||| | |||||||    
T  36098605 gctaagagttatt 36098593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 6723812 - 6723689
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttc 123  Q
    |||||||||||| | ||||||||| ||| | |||| ||||||||||||||| |||  ||||| ||| || || | |||||| ||||||||||||||||||    
T  6723812 tcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcctcctttcaattttcatggatggtggcttagtccgttc 6723713  T
Q  124 accttgttaggcataggctgatag 147  Q
    ||| || | || ||||||| ||||    
T  6723712 accatgcttggaataggctaatag 6723689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 5411773 - 5411835
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    ||||||||||||||| |||   |||||||||||||||||||||||||| ||||||||||||||    
T  5411773 gtggttgaaggtgaagtttgtaactcttccctttaactatcatggttgttggcttagtccgtt 5411835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 149
Target Start/End: Complemental strand, 10686286 - 10686161
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttc 123  Q
    ||||||||| |||| ||||||||| ||  |||||  ||||||||||| ||| ||| ||| ||||||| ||||   ||||||||||||| || ||||||||    
T  10686286 tcaggtggtggataagattaagtcccttacatttgcgtggttgaaggcgaagtttactaatcttcccattaatcttcatggttggtggttttgtccgttc 10686187  T
Q  124 accttgttaggcataggctgatagtt 149  Q
    ||  |||| |||||||||| ||||||    
T  10686186 acaatgttgggcataggctaatagtt 10686161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 28442210 - 28442130
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcatagg 140  Q
    ||||||||||||||| |||    ||||||||||||||||||||||||||||||||||||| || || || ||||| |||||    
T  28442210 gtggttgaaggtgaagtttgtctctcttccctttaactatcatggttggtggcttagtccatttactttattaggaatagg 28442130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 26260768 - 26260867
Alignment:
Q  43 aagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggct 142  Q
    |||||||| || |||| ||||||||||| ||| ||| || |||||||||| || |||||||| |||||||||||||| || ||| |||| ||||| ||||    
T  26260768 aagtctcttgcttttacgtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgttgggcattggct 26260867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 4889464 - 4889549
Alignment:
Q  40 attaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcac 125  Q
    |||||||| || ||||| | |||||| |||| ||| || ||| |||||||||||||||||||||| ||||| |||||||| |||||    
T  4889464 attaagtcgcttgcattcatgtggttcaaggcgaagttcccttctcttccctttaactatcatgggtggtgacttagtccattcac 4889549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 45718367 - 45718423
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttag 116  Q
    |||| ||||| |||||||| | |||||||||||||| ||||||||||||||||||||    
T  45718367 gtggctgaagatgaaatttgccactcttccctttaattatcatggttggtggcttag 45718423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 158
Target Start/End: Original strand, 9484879 - 9484977
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggctgatagttatttctttt 158  Q
    ||||||||||| |||||||  | |||||||||| || ||||||||||||||| |||||| ||||||  |||| ||||| | ||  | ||||||||||||    
T  9484879 gtggttgaaggcgaaatttgtttctcttcccttcaattatcatggttggtggtttagtcagttcacaatgttgggcatcgactagttgttatttctttt 9484977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 27568381 - 27568475
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtc 118  Q
    ||||||||| || | |||||||||||| || |||| |||||||||||  ||||||  | |||||||||| || || ||||| |||||||||||||    
T  27568381 tcaggtggtagaaacgattaagtctcttgcttttacgtggttgaaggcaaaatttgtttctcttcccttcaattaccatgggtggtggcttagtc 27568475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 48973685 - 48973747
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    |||||| |||||||| |||   |||||||||||||| |||||||| |||||||||||||||||    
T  48973685 gtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgtt 48973747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 28400529 - 28400594
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcac 125  Q
    |||| |||||||||| |||   |||||||| |||||||||||||| |||||||||||||| |||||    
T  28400529 gtggatgaaggtgaagtttgtcactcttccttttaactatcatgggtggtggcttagtccattcac 28400594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 25392413 - 25392289
Alignment:
Q  34 gataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttag 133  Q
    |||| ||||||||| ||||||| || ||||||||||| ||| ||| ||  | ||||||| || |||||| ||| |||||||||| |||| ||| || | |    
T  25392413 gataagattaagtcgctcgcatgtatgtggttgaaggcgaagttttcttattttcccttcaattatcattgttagtggcttagttcgtttaccatgatgg 25392314  T
Q  134 gcataggctgatagttatttctttt 158  Q
    | |||  || |||||||||||||||    
T  25392313 gaataaactaatagttatttctttt 25392289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 52251399 - 52251438
Alignment:
Q  84 tcttccctttaactatcatggttggtggcttagtccgttc 123  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  52251399 tcttcccctcaactatcatggttggtggcttagtccgttc 52251438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 50039686 - 50039759
Alignment:
Q  64 ttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcatagg 140  Q
    ||||||||||| | | |||||||||||||||| |||   ||||||||| ||||||||||||| || | |||||||||    
T  50039686 ttgaaggtgaagtatgctactcttccctttaattat---ggttggtggattagtccgttcactttatgaggcatagg 50039759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 23997141 - 23997205
Alignment:
Q  55 tttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 119  Q
    ||||||||||||||||||||| |   | ||||| ||||||| |||||||| || |||||||||||    
T  23997141 tttaggtggttgaaggtgaaactcgtttctctttcctttaattatcatggctgatggcttagtcc 23997205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 42450694 - 42450626
Alignment:
Q  58 aggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcacc 126  Q
    |||||||||| |||||||| | |  ||||| |||| || ||||| ||||||||||||| ||||||||||    
T  42450694 aggtggttgagggtgaaatgtacatctcttgccttcaattatcacggttggtggcttaatccgttcacc 42450626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 52626563 - 52626599
Alignment:
Q  83 ctcttccctttaactatcatggttggtggcttagtcc 119  Q
    |||||||||| || |||||||||||||||||||||||    
T  52626563 ctcttcccttcaattatcatggttggtggcttagtcc 52626599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 33645942 - 33645730
Alignment:
Q  19 ataagtcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtc 118  Q
    ||||||||| |||| |||| ||||||||| ||||||||||||||||||||||  |||||| |||||||||| || || || |||||||||||| ||||||    
T  33645942 ataagtcagatggttgataagattaagtcgctcgcatttaggtggttgaaggaaaaatttgctactcttcctttcaattaccatggttggtgggttagtc 33645843  T
Q  119 cgttcaccttgttaggcataggctgatagttatttcttttttgcttcgttatgtacag--tttcctcttataaatattgtatcgacattgtttgtctttc 216  Q
     ||||||| | ||   ||||||||||||||||||||||||||| | | |  |||||||  ||||||||| |||||||||| |||||||||||| | | ||    
T  33645842 tgttcaccattttgaacataggctgatagttatttcttttttgttgcttcttgtacagtttttcctcttgtaaatattgtttcgacattgtttatatgtc 33645743  T
Q  217 ctatgtacacctt 229  Q
    |||||||||||||    
T  33645742 ctatgtacacctt 33645730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 27009200 - 27009330
Alignment:
Q  28 gtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcacct 127  Q
    ||||| |||| ||||||||||||||| |||||||| ||||||| ||||||| || |||||||||| || || ||||||||||||||||||||||| |||     
T  27009200 gtggttgataagattaagtctctcgcttttaggtgattgaaggcgaaatttacttctcttcccttcaattaccatggttggtggcttagtccgtttacca 27009299  T
Q  128 tgttaggcataggctgatagttatttctttt 158  Q
    |  | | |||||||| |||||||||||||||    
T  27009300 tactggacataggctaatagttatttctttt 27009330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 841613 - 841531
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggct 142  Q
    ||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| |||||| ||  ||||||||||||    
T  841613 gtggttgaaggtgaagtatgctactcttccctttaactatcatggttggtggcttagtctgttcactttactaggcataggct 841531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 9840768 - 9840898
Alignment:
Q  28 gtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcacct 127  Q
    ||||| |||| |||||| || ||||| |||| ||| |||||||  |||||| |||||||||| || || ||||||||||||||||||| ||||||||||     
T  9840768 gtggttgataagattaaatcgctcgcttttatgtgattgaaggcaaaatttgctactcttccattcaattatcatggttggtggcttaatccgttcacca 9840867  T
Q  128 tgttaggcataggctgatagttatttctttt 158  Q
    || | |||||| ||| |||||||||||||||    
T  9840868 tgatgggcatatgctaatagttatttctttt 9840898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 30505717 - 30505843
Alignment:
Q  28 gtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcacct 127  Q
    ||||| |||| |||||||| |||||||||||  | |||||||| ||||||| || | |||||||| || ||||||||||||||| |||||| ||| |||     
T  30505717 gtggttgataagattaagtttctcgcatttatctagttgaaggagaaattttcttcacttcccttcaattatcatggttggtggtttagtctgtttacca 30505816  T
Q  128 tgttaggcataggctgatagttatttc 154  Q
    |||| |||||||||| |||||||||||    
T  30505817 tgttgggcataggctaatagttatttc 30505843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 39117416 - 39117546
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttc 123  Q
    ||||||||| |||| ||||||||| ||| |||||| |||||||| || ||||||| |||||||| |||| ||||  ||||| ||||||||||||||||||    
T  39117416 tcaggtggtggataagattaagtccctcacatttatgtggttgagggagaaatttactactctttccttcaacttacatggctggtggcttagtccgttc 39117515  T
Q  124 accttgttaggcataggctgatagttatttc 154  Q
    ||  |||| | |||||||| || ||||||||    
T  39117516 acaatgttggacataggctaattgttatttc 39117546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 27708287 - 27708158
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttc 123  Q
    ||||||||| |||| ||||||||| ||||| |||| |||||| |||| ||||||| ||||||||||||| ||   ||||||||||||||||| || ||||    
T  27708287 tcaggtggttgataagattaagtcgctcgcttttacgtggttaaaggcgaaatttgctactcttcccttcaatcttcatggttggtggcttaatctgttc 27708188  T
Q  124 accttgttaggcataggctgatagttattt 153  Q
    ||| |  | |||||||||| ||||||||||    
T  27708187 accgtactgggcataggctaatagttattt 27708158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 24739816 - 24739916
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||||||||||||   |  |||| | ||||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||||||    
T  24739816 caggtggtggataggattaagttgttaacattcaagtggttgaaggtgaagtatgctacccttccctttaactatcatggttggtggcttagtccgttca 24739915  T
Q  125 c 125  Q
    |    
T  24739916 c 24739916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 153
Target Start/End: Complemental strand, 37738145 - 37738057
Alignment:
Q  65 tgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggctgatagttattt 153  Q
    |||||| ||||||  |||||||||||||||||| |||||| ||||||||||||||||||||| | || |||||||||| ||||||||||    
T  37738145 tgaaggcgaaattcactactcttccctttaactttcatggctggtggcttagtccgttcaccattttgggcataggctaatagttattt 37738057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 36176741 - 36176612
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||| ||||||||| ||| |||||| |||||| | |||||||||| || |||||| ||| || ||||||||||||||  ||||||| || |    
T  36176741 caggtggttgataagattaagtcgctcacatttatgtggtt-atggtgaaatttgcttctcttctcttcaattatcatggttggtgttttagtccattta 36176643  T
Q  125 ccttgttaggcataggctgatagttatttct 155  Q
    || |||| || ||||||| ||||||||||||    
T  36176642 ccatgttgggtataggctaatagttatttct 36176612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 18766683 - 18766769
Alignment:
Q  39 gattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcac 125  Q
    ||||||||| ||| |||||| |||||||| || ||||||| ||| |||||||||||| | |||||| |||||||||| |||||||||    
T  18766683 gattaagtccctcacatttatgtggttgatggcgaaatttactaatcttccctttaattttcatggctggtggcttaatccgttcac 18766769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 40426970 - 40426909
Alignment:
Q  81 tactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggct 142  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||  ||||||| ||||    
T  40426970 tactcttccctttaactatcatggttggtggcttaatccgttcactttactaggcatcggct 40426909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 31640241 - 31640335
Alignment:
Q  28 gtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    ||||| |||| ||||||||| || || |||| ||||||||||| ||||||| || |||||||| | || || ||||| |||||||||||||||||    
T  31640241 gtggtagataagattaagtcacttgcttttacgtggttgaaggcgaaatttgcttctcttcccctcaattaccatggatggtggcttagtccgtt 31640335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 44736076 - 44735982
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtc 118  Q
    |||||||||||| | ||||||||| ||| | |||| ||||||||||| ||| |||  |||||||||||| || | |||||||| |||||||||||    
T  44736076 tcaggtggtcgacaagattaagtccctcacttttatgtggttgaaggcgaagtttaatactcttcccttcaattttcatggttagtggcttagtc 44735982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 1997762 - 1997682
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcatagg 140  Q
    ||||||||||||||| | | |  ||||||||||||| |||||||||||||||  |||||| ||||| || |||||||||||    
T  1997762 gtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggaatagtcctttcactttattaggcatagg 1997682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 8090525 - 8090584
Alignment:
Q  83 ctcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggct 142  Q
    |||||||||| || |||||||| ||||||||||||||||| ||| | |||||||| ||||    
T  8090525 ctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggct 8090584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 38409024 - 38409083
Alignment:
Q  63 gttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    |||||||||||||||  |||| |||||||| || ||||||||||||||| | ||||||||    
T  38409024 gttgaaggtgaaattcgctacacttcccttcaattatcatggttggtggttcagtccgtt 38409083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 45131191 - 45131132
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 119  Q
    ||||||||||| ||||| | || |||||||||| || |||||||| ||||||||||||||    
T  45131191 gtggttgaaggggaaatatgcttctcttcccttcaattatcatgggtggtggcttagtcc 45131132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 9933156 - 9933090
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcacc 126  Q
    |||||||| |||||||||| |  ||||| | |||||||| || ||||||||||||| ||||||||||    
T  9933156 gtggttgagggtgaaatttacctctcttgcttttaactaccacggttggtggcttaatccgttcacc 9933090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 35590281 - 35590347
Alignment:
Q  84 tcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggctgatagtta 150  Q
    ||||||||| ||||||||||||||||||||||| || ||| |  | || |||||||||| |||||||    
T  35590281 tcttcccttcaactatcatggttggtggcttagccccttctctattttgggcataggctaatagtta 35590347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 18948827 - 18948895
Alignment:
Q  58 aggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcacc 126  Q
    |||||||||| |||||||| | |  ||||| |||| || ||||| ||||||||||||| ||||||||||    
T  18948827 aggtggttgagggtgaaatgttcatctcttgccttcaattatcacggttggtggcttaatccgttcacc 18948895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 10552637 - 10552754
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||||||||||||   |  |||| | ||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||    
T  10552637 caggtggtggataggattaagttgttaacattcaagtggttgaaggtgaagtatgctactcttccctttaactatcatggttggtggcttagtccgttca 10552736  T
Q  125 ccttgttaggcataggct 142  Q
    | ||  ||||||||||||    
T  10552737 ctttagtaggcataggct 10552754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 25130538 - 25130409
Alignment:
Q  28 gtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcacct 127  Q
    |||||||||| ||| ||||| ||||| || | ||||||||||| ||||||| |||||||| || | ||||||||||||||||||||||||||||| |  |    
T  25130538 gtggtcgataagatcaagtccctcgctttcatgtggttgaaggagaaatttgctactctttccctcaactatcatggttggtggcttagtccgtttatat 25130439  T
Q  128 tgttaggcataggctgatagttatttcttt 157  Q
    | || |||||| | ||||||||||| ||||    
T  25130438 tattgggcatatgatgatagttattccttt 25130409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 13137112 - 13137196
Alignment:
Q  58 aggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggct 142  Q
    ||||||||||||||||||||| ||||||||  ||| || |||||||||||||||||||||||||| |||||  ||||||||||||    
T  13137112 aggtggttgaaggtgaaatttgctactcttttcttcaattatcatggttggtggcttagtccgtttaccttactaggcataggct 13137196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 29969873 - 29969973
Alignment:
Q  55 tttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggctgatagttatttc 154  Q
    |||| ||||||||||| ||||||| |||||||||||||  ||| | |||||||||||||||||||||||||| || ||| ||||| || |||||||||||    
T  29969873 tttatgtggttgaaggcgaaatttactactcttcccttctacttttatggttggtggcttagtccgttcaccatgatagacatagactaatagttatttc 29969972  T
Q  155 t 155  Q
    |    
T  29969973 t 29969973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 20510392 - 20510522
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||| |||||||||  || | |||| |||||||||||||||||||   || |||||||| || | ||||||||||||||||||||||||||    
T  20510392 caggtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtccgttca 20510491  T
Q  125 ccttgttaggcataggctgatagttatttct 155  Q
    || || | |||||||| | |||||| |||||    
T  20510492 ccatgctgggcataggttaatagttttttct 20510522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 9831382 - 9831483
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttc 123  Q
    ||||||||| |||| ||| |||||||| || |||||||||||||||| ||||||   ||| |||||||| || |||||||| ||||||||||||||||||    
T  9831382 tcaggtggtggataagatcaagtctcttgcttttaggtggttgaaggcgaaattcgttacacttcccttcaattatcatggctggtggcttagtccgttc 9831481  T
Q  124 ac 125  Q
    ||    
T  9831482 ac 9831483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 40153992 - 40153925
Alignment:
Q  58 aggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcac 125  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| | |||||||    
T  40153992 aggtggttgaaggtgaaatttgctaatcttccctttaactatcatagttggtggcttaatacgttcac 40153925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 30972453 - 30972360
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggctgatagttattt 153  Q
    |||| |||||| |||||||||| |||||||||| ||||||||||| |||||||||||||  |||||  | || |||||||||| ||||||||||    
T  30972453 gtggctgaaggcgaaatttccttctcttcccttcaactatcatggctggtggcttagtcatttcactatttttggcataggctaatagttattt 30972360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 11131287 - 11131172
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||||||||||||  ||  | |||  ||||||||||||||| |||   |||||||||||||| ||||||||||||||||||||||| || |    
T  11131287 caggtggtagataggattaagttgctatcttttcagtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtcctttta 11131188  T
Q  125 ccttgttaggcatagg 140  Q
    | || ||||| |||||    
T  11131187 ctttattaggaatagg 11131172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 27270071 - 27269973
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggctgatagttatttctttt 158  Q
    ||||||||||| |||||||||| | |||||||| || ||||||||||||||||||||||| |||||  | || | |||| ||| |||||||||| ||||    
T  27270071 gtggttgaaggcgaaatttccttcacttcccttcaattatcatggttggtggcttagtccattcacaattttggacatatgctaatagttatttgtttt 27269973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 42527407 - 42527325
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggct 142  Q
    ||||||||||||||||||| |||||||||| |  || ||||||||||||||||||| ||||||||| ||  || |||||||||    
T  42527407 gtggttgaaggtgaaattttctactcttccttccaattatcatggttggtggcttaatccgttcacattactaagcataggct 42527325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 52577982 - 52578116
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttc 123  Q
    ||||||| | |||| ||||||||| || || |||| ||||||||||||||| |||    |||||||||| || ||||||||||||||||||||| ||||     
T  52577982 tcaggtgatagataagattaagtcccttgcttttacgtggttgaaggtgaagtttgtatctcttcccttcaattatcatggttggtggcttagtgcgttt 52578081  T
Q  124 accttgttaggcataggctgatagttatttctttt 158  Q
     || |  ||||||||||||  | ||||||||||||    
T  52578082 gccattctaggcataggctagtggttatttctttt 52578116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 54870861 - 54870801
Alignment:
Q  82 actcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggct 142  Q
    |||||||||||||| |||||||||||||||||||||||||| || ||  ||||||||||||    
T  54870861 actcttccctttaattatcatggttggtggcttagtccgtttactttactaggcataggct 54870801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 22653286 - 22653419
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||| |||||| || ||| |||||| ||||||||||| ||||||| ||    || |||| || |||||||||||||||||||||| ||| |    
T  22653286 caggtggttgataagattaaatcgctcacatttatgtggttgaaggcgaaatttgcttacattaccttcaattatcatggttggtggcttagtctgttta 22653385  T
Q  125 ccttgttaggcataggctgatagttatttctttt 158  Q
    || || |  | |||||||  ||||||||||||||    
T  22653386 ccatgctgagtataggctattagttatttctttt 22653419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 30739584 - 30739504
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcatagg 140  Q
    ||||||||||||||| | | |  ||||||||||||| |||||||||||||||  |||||| ||||| || |||||||||||    
T  30739584 gtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggaatagtcctttcactttattaggcatagg 30739504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 48336994 - 48337081
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggctgatag 147  Q
    ||||||||||| |||||||||| |||||||||| ||  ||||| |||||||| ||||| | |||||  | ||||||||||||| ||||    
T  48336994 gtggttgaaggcgaaatttccttctcttcccttcaatcatcatagttggtggtttagttcattcactatattaggcataggctaatag 48337081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 21204963 - 21204865
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggctgatagttatttctttt 158  Q
    ||||||||| | ||||||| || | |||||||| || ||||||||||||||||||||| | |||||  | || | |||||||| |||||||||| ||||    
T  21204963 gtggttgaatgcgaaattttcttcacttcccttcaattatcatggttggtggcttagttcattcacaattttggacataggctaatagttatttgtttt 21204865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 37772958 - 37773012
Alignment:
Q  72 gaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcacc 126  Q
    |||||||||| |||||||||| || || |||||||||||||||||||| ||||||    
T  37772958 gaaatttccttctcttcccttcaattaccatggttggtggcttagtcctttcacc 37773012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 18921946 - 18922026
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcatagg 140  Q
    ||||||||||||||| | | |  ||||||||||||| ||||||||||||| |  |||||| ||||| || |||||||||||    
T  18921946 gtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggttgactagtcctttcactttattaggcatagg 18922026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 12115024 - 12115091
Alignment:
Q  55 tttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    ||||||||||||||||||||| |   || ||||||||| || |||||||||| |||||| ||||||||    
T  12115024 tttaggtggttgaaggtgaaactcgttattcttcccttcaattatcatggtttgtggctcagtccgtt 12115091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 29521754 - 29521656
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggctgatagttatttctttt 158  Q
    ||||||||||| ||||| | || ||||||| || || ||||||| ||||||| ||| |||||||||  |||| ||||| | ||  ||||||||||||||    
T  29521754 gtggttgaaggcgaaatgtgcttctcttcctttcaattatcatgattggtggtttaatccgttcacaatgttgggcattgactagtagttatttctttt 29521656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 43001717 - 43001807
Alignment:
Q  34 gataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||| ||||||||| ||  |||||| ||||||||||| ||| ||| |||||||||  || || ||||||   |||||||||||||||||||    
T  43001717 gataagattaagtcactaacatttatgtggttgaaggcgaagtttactactcttcatttcaattatcatatgtggtggcttagtccgttca 43001807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 37207459 - 37207398
Alignment:
Q  61 tggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    ||||| |||||||| |||   |||||||||||||| ||||||||||| ||||| ||||||||    
T  37207459 tggttaaaggtgaagtttataactcttccctttaattatcatggttgatggctaagtccgtt 37207398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 32533163 - 32533047
Alignment:
Q  26 aggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcac 125  Q
    ||||||| |||||||||||||   |  |||| | |||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32533163 aggtggtggataggattaagttgttaacattcaagtggttgaagatgaagtttgctactcttccctttaactatcatggttggtggcttagtccgttcac 32533064  T
Q  126 cttgttaggcataggct 142  Q
     || | |||||||||||    
T  32533063 tttatgaggcataggct 32533047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 2682761 - 2682894
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    ||||| ||||| | ||||||||| || || |||||||||||||||||||||||||||||| ||| ||| || | ||||||||||||||||||||| ||||    
T  2682761 caggttgtcgacaagattaagtcccttgcttttaggtggttgaaggtgaaatttcctactattctcttcaattgtcatggttggtggcttagtcctttca 2682860  T
Q  125 ccttgttaggcataggctgatagttatttctttt 158  Q
    || || |  ||||||| | | |||||||||||||    
T  2682861 ccatgctgagcataggttaaaagttatttctttt 2682894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 18672069 - 18672150
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggct 142  Q
    ||||||||||||||| | || ||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  18672069 gtggttgaaggtgaagtatc-tactcttccctttaactatcatggttggtggctgagtccgttcaccttactaggcataggct 18672150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 12688190 - 12688314
Alignment:
Q  29 tggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcacctt 128  Q
    |||| |||| ||||||||| ||| |||||  ||||||||||| ||||||| |||||||||||||||| |  ||||| |||||||||||||||||| |  |    
T  12688190 tggtggataagattaagtccctcacatttgtgtggttgaaggagaaatttactactcttccctttaatttacatggctggtggcttagtccgttcgcaat 12688289  T
Q  129 gttaggcataggctgatagttattt 153  Q
    ||| |||||||||| || |||||||    
T  12688290 gttgggcataggctaattgttattt 12688314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 9907156 - 9907292
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttc 123  Q
    ||||||||| ||||  |||||||| ||||| || | ||||||||||| |||||  ||| || ||||||| || |||||||  |||||||||| ||| |||    
T  9907156 tcaggtggtagataaaattaagtcgctcgctttcatgtggttgaaggagaaatacccttctattcccttcaattatcatgcgtggtggcttaatccattc 9907255  T
Q  124 accttgttaggcataggctgatagttatttctttttt 160  Q
    ||| | ||||||||||||| || ||||||||| ||||    
T  9907256 accattttaggcataggctaattgttatttctgtttt 9907292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 11298657 - 11298598
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 119  Q
    ||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||    
T  11298657 gtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtcc 11298598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 15117316 - 15117238
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcata 138  Q
    ||||||||||||||| | | |||||||||||||||| |||||||||||||||  |||||| ||||| || |||||||||    
T  15117316 gtggttgaaggtgaagtatgctactcttccctttaattatcatggttggtggagtagtcctttcactttattaggcata 15117238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 34714917 - 34715047
Alignment:
Q  28 gtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcacct 127  Q
    ||||| |||| ||||||||||||| | |||||||||||||| |  |||||| || |||||||| | || || ||||||||||||||||||| ||| |||     
T  34714917 gtggttgataagattaagtctctcacttttaggtggttgaaagcaaaatttacttctcttcccatcaattaccatggttggtggcttagtctgtttacca 34715016  T
Q  128 tgttaggcataggctgatagttatttctttt 158  Q
    |  | | ||||| || |||||||||||||||    
T  34715017 tactggacatagactaatagttatttctttt 34715047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 17292866 - 17292769
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    |||||||||  || |||||||||||| ||||| | ||||||||| |  |||||| || |||||||||| || ||||||||||| ||||||||||||||    
T  17292866 caggtggtcattaagattaagtctctagcattcatgtggttgaacgccaaatttgcttctcttcccttcaattatcatggttgatggcttagtccgtt 17292769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 18015845 - 18015748
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    |||||||| |||||||||||||   |  | |||| |||||||  |||||| ||| | |||||||||||||||||||||||||||||||||| ||||||    
T  18015845 caggtggtggataggattaagttgttaacgtttaagtggttgggggtgaagtttacaactcttccctttaactatcatggttggtggcttactccgtt 18015748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 27105270 - 27105398
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||| ||||||||| ||| |||||  ||||||||||| ||| ||| ||||| |||||||||| |  ||||| |||||||||| ||||||||    
T  27105270 caggtggtggataagattaagtccctcacatttgtgtggttgaaggagaagtttactactattccctttaatttacatggctggtggcttaatccgttca 27105369  T
Q  125 ccttgttaggcataggctgatagttattt 153  Q
       | || |||||||||| || |||||||    
T  27105370 aaatattgggcataggctaattgttattt 27105398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 27147079 - 27147207
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||| ||||||||| ||| |||||  ||||||||||| ||| ||| ||||| |||||||||| |  ||||| |||||||||| ||||||||    
T  27147079 caggtggtggataagattaagtccctcacatttgtgtggttgaaggagaagtttactactattccctttaatttacatggctggtggcttaatccgttca 27147178  T
Q  125 ccttgttaggcataggctgatagttattt 153  Q
       | || |||||||||| || |||||||    
T  27147179 aaatattgggcataggctaattgttattt 27147207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 11324496 - 11324563
Alignment:
Q  55 tttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    |||| ||||||||||| ||||||| || |||||||||| || |||||||| |||||||||||||||||    
T  11324496 tttacgtggttgaaggcgaaatttgcttctcttcccttcaattatcatgggtggtggcttagtccgtt 11324563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 22469420 - 22469522
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttc 123  Q
    ||||||||| ||||  |||||||| ||||| || | |||||||||||  ||||  ||| |||||||||| || ||||||| ||||||||||||||| |||    
T  22469420 tcaggtggtagataaaattaagtcgctcgctttcatgtggttgaaggataaatacccttctcttcccttcaattatcatgcttggtggcttagtccattc 22469519  T
Q  124 acc 126  Q
    |||    
T  22469520 acc 22469522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 7824238 - 7824120
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaat-ttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    |||||||||||| | ||||||||| || || |||| ||||||||||| ||| | ||||| |||||||| | || || ||||| ||||||||||| |||||    
T  7824238 tcaggtggtcgacaagattaagtcgcttgcctttacgtggttgaaggcgaagtattcct-ctcttcccctcaattaccatgggtggtggcttagcccgtt 7824140  T
Q  123 caccttgttaggcataggct 142  Q
    |||| | || ||||||||||    
T  7824139 caccattttgggcataggct 7824120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 29321389 - 29321330
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 119  Q
    ||||||||| ||||| |||   |||||||||||||||||| |||||||||||||||||||    
T  29321389 gtggttgaaagtgaagtttgtcactcttccctttaactatgatggttggtggcttagtcc 29321330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 7155422 - 7155552
Alignment:
Q  29 tggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcacctt 128  Q
    |||| |||| |||||||| |||  | |||| |||||||||||  |||||| || |||| ||||| || |||||| | |||||| |||||||||||||| |    
T  7155422 tggttgataagattaagtttcttacttttacgtggttgaaggaaaaattttcttctctacccttcaattatcatagatggtggtttagtccgttcaccgt 7155521  T
Q  129 gttaggcataggctgatagttatttcttttt 159  Q
      |  ||||||||| | ||||||||||||||    
T  7155522 actgagcataggctaagagttatttcttttt 7155552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 14216085 - 14215993
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggctgatagttatt 152  Q
    ||||||||||  |||||||||| |||||| |||  |||||||| ||||||||||||  || || ||| |||| || ||||||| |||||||||    
T  14216085 gtggttgaagaagaaatttccttctcttctcttcgactatcatagttggtggcttaacccttttaccatgttgggaataggctaatagttatt 14215993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 10944161 - 10944206
Alignment:
Q  74 aatttcctactcttccctttaactatcatggttggtggcttagtcc 119  Q
    |||||||| ||||||||||||| || ||||||| ||||||||||||    
T  10944161 aatttccttctcttccctttaattaccatggtttgtggcttagtcc 10944206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 122
Target Start/End: Original strand, 18673363 - 18673460
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    |||||||| ||||  |||||||||||  | |||| ||||||||||| ||||| |   | ||||||| | || |||||||||||||||||||| |||||    
T  18673363 caggtggtggataaaattaagtctcttacttttatgtggttgaaggagaaatatgtcagtcttcccctcaattatcatggttggtggcttagcccgtt 18673460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 5667408 - 5667348
Alignment:
Q  82 actcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggct 142  Q
    |||||| |||| || ||||||||||||||| |||||||||| ||  | |||||||||||||    
T  5667408 actctttccttcaattatcatggttggtggattagtccgtttactattttaggcataggct 5667348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 27482772 - 27482654
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttc 123  Q
    ||||||||| |||| ||||||||| ||||| ||| ||||||||||||||||||    ||| |||||||| || |||||||| ||||||||||||||||||    
T  27482772 tcaggtggttgataagattaagtccctcgccttttggtggttgaaggtgaaatacgttacacttcccttcaattatcatggctggtggcttagtccgttc 27482673  T
Q  124 accttgttaggcataggct 142  Q
    ||| |||| ||||||||||    
T  27482672 accatgttgggcataggct 27482654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 19315103 - 19314970
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||| ||||||||| ||| |||||| ||||||||||| ||||||| ||    ||||||  || |||||||||||||||||||| ||||| |    
T  19315103 caggtggttgataagattaagtcactcacatttatgtggttgaaggcgaaatttgctttatttccctggaattatcatggttggtggcttagcccgttta 19315004  T
Q  125 ccttgttaggcataggctgatagttatttctttt 158  Q
    || || |||||||||||| |||||||||| ||||    
T  19315003 ccatgctaggcataggctaatagttatttatttt 19314970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 25326131 - 25326254
Alignment:
Q  34 gataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttag 133  Q
    ||||| |||||| |||| || ||||||||||||||||| ||||||  ||||||| |||| || || ||| |||||||||||||| |||||||| |||| |    
T  25326131 gatagtattaaggctctagcctttaggtggttgaaggtaaaatttgttactcttgccttcaattaccatcgttggtggcttagttcgttcaccatgtttg 25326230  T
Q  134 gcataggctgatagttatttcttt 157  Q
    |||| ||||||||| | |||||||    
T  25326231 gcatcggctgatagctttttcttt 25326254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 12831613 - 12831489
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||| |||||||||  || | |||| |||||||||||||||||||   || |||||||| || | ||||||||||||||||||||||||||    
T  12831613 caggtggttgataagattaagtcgatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtccgttca 12831514  T
Q  125 ccttgttaggcataggctgatagtt 149  Q
    |  |||| |||||||| | ||||||    
T  12831513 ctatgttgggcataggttaatagtt 12831489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 12863588 - 12863464
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||| |||||||||  || | |||| |||||||||||||||||||   || |||||||| || | ||||||||||||||||||||||||||    
T  12863588 caggtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaattttcatggttggtggcttagtccgttca 12863489  T
Q  125 ccttgttaggcataggctgatagtt 149  Q
    |  |||| |||||||| | ||||||    
T  12863488 ctatgttgggcataggttaatagtt 12863464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 7961244 - 7961129
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    |||||||| |||||||||||||  ||  |||| | ||||||||||| ||| | | |||||||||  ||||||||||||||||||||||||||| ||||||    
T  7961244 caggtggtggataggattaagttgctaacattcaagtggttgaaggcgaagtatgctactcttcattttaactatcatggttggtggcttagttcgttca 7961145  T
Q  125 ccttgttaggcatagg 140  Q
    | ||  ||||||||||    
T  7961144 ctttactaggcatagg 7961129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 26778805 - 26778687
Alignment:
Q  39 gattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcata 138  Q
    |||||||||||| ||||| | |||||||||||||||||||  | ||||| |||| || ||||||||||||||| |||||||||| ||| || | | ||||    
T  26778805 gattaagtctctagcattcatgtggttgaaggtgaaatttttttctctttccttcaattatcatggttggtggtttagtccgtttaccatgctcgacata 26778706  T
Q  139 ggctgatagttatttctttt 158  Q
    |||| |||| ||||||||||    
T  26778705 ggctaatag-tatttctttt 26778687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 39839938 - 39840009
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgtt 131  Q
    ||||||||||  ||| |||||  ||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  39839938 gtggttgaagacgaagtttccatctcttccctttaactatcatggttggtggcttagtcccttcaccatgtt 39840009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 29994647 - 29994714
Alignment:
Q  55 tttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    |||| ||||||||||||||| ||||||  ||||||||| || ||||||||||||||||||| ||||||    
T  29994647 tttaagtggttgaaggtgaagtttccttttcttcccttcaattatcatggttggtggcttaatccgtt 29994714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 4396757 - 4396672
Alignment:
Q  40 attaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcac 125  Q
    |||||||| ||| ||||||  ||||||| || ||||||| ||||||||||||||||||  ||||  |||| |||||||||||||||    
T  4396757 attaagtccctcacatttatatggttgagggagaaatttactactcttccctttaacttacatgactggtagcttagtccgttcac 4396672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 11305855 - 11305951
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggctgatagttatttcttt 157  Q
    ||||||||||| |||| |||||| ||| ||||| ||||| |||| ||||||||||||||| ||||   |||| |||||||||| || |||||||||||    
T  11305855 gtggttgaaggcgaaaattcctaatctccccttcaactaccatgtttggtggcttagtccattcaatatgttgggcataggctaat-gttatttcttt 11305951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 7465257 - 7465337
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcatagg 140  Q
    ||||||||||||||| | | |  ||||||||||||| |||||||||||||||  |||||| ||||| || |||||||||||    
T  7465257 gtggttgaaggtgaagtatgcatctcttccctttaattatcatggttggtggtctagtcctttcactttattaggcatagg 7465337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 32252148 - 32252215
Alignment:
Q  55 tttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    |||||||||||||| | |||| |  |||||||||| || || ||||||||||||||||||||||||||    
T  32252148 tttaggtggttgaacgcgaaactcgctactcttcctttcaattatcatggttggtggcttagtccgtt 32252215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 16610601 - 16610691
Alignment:
Q  59 ggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggctgatagtt 149  Q
    |||||||||||  ||| |||  | |||||||||| || |||||||| ||||||||||||||||| ||| | |||||||| |||| ||||||    
T  16610601 ggtggttgaagacgaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaatagtt 16610691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 21042005 - 21042045
Alignment:
Q  82 actcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  21042005 actcttccctttaattatcatgggtggtggcttagtccgtt 21042045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 29651827 - 29651782
Alignment:
Q  97 tatcatggttggtggcttagtccgttcaccttgttaggcataggct 142  Q
    |||||||| ||||||||||||||||| ||| |||| ||||||||||    
T  29651827 tatcatgggtggtggcttagtccgtttaccatgttgggcataggct 29651782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 31706525 - 31706408
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    ||||||||||| | ||||||||| || || |||| |||||| |||| ||| | |  | |||||||| | || || ||||| ||||||||||||||||| |    
T  31706525 caggtggtcgacaagattaagtcgcttgcttttacgtggttaaaggcgaagtatatttctcttcccctcaattaccatgggtggtggcttagtccgttta 31706426  T
Q  125 ccttgttaggcataggct 142  Q
    || | || ||||||||||    
T  31706425 ccatattgggcataggct 31706408  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 32018049 - 32017992
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagt 117  Q
    ||||||||||||| | | | |||  ||||||||||| |||||||||||||||||||||    
T  32018049 gtggttgaaggtgcagtatgctaaccttccctttaattatcatggttggtggcttagt 32017992  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 18967882 - 18967946
Alignment:
Q  55 tttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 119  Q
    |||| ||||||||||| ||||||| || ||||||| |||||  ||||||| || |||||||||||    
T  18967882 tttatgtggttgaaggcgaaatttgcttctcttccatttaatgatcatggatgatggcttagtcc 18967946  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 33692999 - 33692870
Alignment:
Q  26 aggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcac 125  Q
    ||||||| |||| |||||||||  || | |||| |||||||||||||||||||   || |||||||| |||| |||||||||||||||||| ||||||||    
T  33692999 aggtggttgataagattaagtccatctcttttatgtggttgaaggtgaaatttaacacgcttcccttcaactttcatggttggtggcttagcccgttcac 33692900  T
Q  126 cttgttaggcataggctgatagttatttct 155  Q
    | || | |||||||| | |||||| |||||    
T  33692899 catgctgggcataggttaatagttttttct 33692870  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 29542452 - 29542393
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 119  Q
    ||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||    
T  29542452 gtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtcc 29542393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 41878726 - 41878785
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 119  Q
    ||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||    
T  41878726 gtggttgaaggtgaagtttgtcactcttccctttaactatcatggttggtggcttagtcc 41878785  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 19979343 - 19979287
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttag 116  Q
    ||||||||||||||| |||   |||||||||||||||||||||||||||||||||||    
T  19979343 gtggttgaaggtgaagtttgtaactcttccctttaactatcatggttggtggcttag 19979287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 25845646 - 25845741
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 119  Q
    ||||||||| ||||  |||||||| ||| | || | ||||||||||| ||| |||||| |||| ||||| ||||| ||||||||||||||||||||    
T  25845646 tcaggtggttgataaaattaagtcgctctctttcatgtggttgaaggcgaagtttccttctctgcccttgaactaccatggttggtggcttagtcc 25845741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 26285215 - 26285298
Alignment:
Q  59 ggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggct 142  Q
    |||||||||| ||||||||| |||| |||| ||| || ||||| ||||| ||||||| ||||||||||||  ||||||||||||    
T  26285215 ggtggttgaatgtgaaatttgctacccttcacttcaattatcaaggttgatggcttaatccgttcaccttactaggcataggct 26285298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 42806354 - 42806289
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcac 125  Q
    ||||||||||||||| |||   |||||||| |||||||||||||| |||||||||||||| |||||    
T  42806354 gtggttgaaggtgaagtttgtcactcttccttttaactatcatgggtggtggcttagtccattcac 42806289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 4740999 - 4741115
Alignment:
Q  26 aggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcac 125  Q
    |||||||||||| ||||||||| || || |||| ||||||||||  ||| | |  | |||||||||| || || ||||| || |||||||||||||| ||    
T  4740999 aggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtatatttctcttcccttcaattaccatgggtgatggcttagtccgtttac 4741098  T
Q  126 cttgttaggcataggct 142  Q
    | | |||||||||||||    
T  4741099 cattttaggcataggct 4741115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 20017523 - 20017407
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttc 123  Q
    ||||||||| || | |||||||||||| || | || ||||||||||  |||||||  | | |||||||| ||||| ||||| ||||||||| ||||||||    
T  20017523 tcaggtggtagaaaagattaagtctcttgcttatacgtggttgaagaagaaatttgtttcacttcccttaaactaccatggctggtggctttgtccgttc 20017424  T
Q  124 accttgttaggcatagg 140  Q
    ||| | || ||||||||    
T  20017423 accattttgggcatagg 20017407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 25408767 - 25408895
Alignment:
Q  29 tggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcacctt 128  Q
    ||||||||| |||||||||| |  ||||   ||||||||||| ||||||  || |  || |||| || ||||||||||||||||||||||| || ||| |    
T  25408767 tggtcgataagattaagtctataacattcgtgtggttgaaggcgaaattcacttcaatttccttcaattatcatggttggtggcttagtccatttaccat 25408866  T
Q  129 gttaggcataggctgatagttatttcttt 157  Q
    ||| || ||||||| || |||||||||||    
T  25408867 gttgggtataggctaattgttatttcttt 25408895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 37537298 - 37537238
Alignment:
Q  55 tttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggctta 115  Q
    |||||||||||||||||||| ||  || ||||||||||||  |||||||||||||||||||    
T  37537298 tttaggtggttgaaggtgaagttcgcttctcttccctttacttatcatggttggtggctta 37537238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 22534037 - 22534096
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 119  Q
    ||||||||||||||| |||   |||||||| |||||||||||||| ||||||||||||||    
T  22534037 gtggttgaaggtgaagtttgtcactcttccttttaactatcatgggtggtggcttagtcc 22534096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 47161017 - 47161084
Alignment:
Q  55 tttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    |||| ||||||||||||||| |||||| ||||||| || || || ||||||||||||||||| |||||    
T  47161017 tttaagtggttgaaggtgaagtttccttctcttccattcaattaccatggttggtggcttagaccgtt 47161084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 6925985 - 6926047
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    |||||| |||||||| |||   |||||||||||||| |||||||| |||||||||||||||||    
T  6925985 gtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgtt 6926047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 53876946 - 53876864
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggct 142  Q
    |||||| |||||||| |||   |||||||||||||| |||||||| ||||||||| ||||||| || ||  ||||||||||||    
T  53876946 gtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttggtccgtttactttactaggcataggct 53876864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 6894192 - 6894307
Alignment:
Q  25 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    ||||||||||||||||||||||  ||  | || |  |||||||||| ||  |||   ||||||||||| || ||||||||||||||| |||||||||| |    
T  6894192 caggtggtcgataggattaagttactgactttcaaatggttgaaggcgaggtttataactcttcccttcaattatcatggttggtggattagtccgttta 6894291  T
Q  125 ccttgttaggcatagg 140  Q
    |  | |||||||||||    
T  6894292 ctattttaggcatagg 6894307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 3857683 - 3857614
Alignment:
Q  53 catttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    |||||| ||||||||| | ||||| |  || |||||||| |||||| ||||||||||||||||| |||||    
T  3857683 catttatgtggttgaaagggaaatatgttagtcttccctctaactaccatggttggtggcttagcccgtt 3857614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 14788867 - 14788959
Alignment:
Q  26 aggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtc 118  Q
    ||||||| |||| ||||||||| || || |||| ||||||||||| |||||||  | |||||||||  || || ||||  |||||||||||||    
T  14788867 aggtggtagataagattaagtcccttgcttttacgtggttgaaggcgaaatttgtttctcttccctccaattaccatgagtggtggcttagtc 14788959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 6503 - 6601
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgtt 122  Q
    ||||||||| |||||||||||||  ||  | || |  ||||| |||||||| ||| | |||||||||||||||||||||||||||||||| ||||||||    
T  6503 tcaggtggtagataggattaagttgctaactttcaattggttaaaggtgaagtttacaactcttccctttaactatcatggttggtggctaagtccgtt 6601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 64388 - 64272
Alignment:
Q  24 tcaggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttc 123  Q
    ||||||||| ||||  |||||||| ||||| ||   ||||||||||| |||||  ||| ||||| |||| || ||||||| ||||||||||||||| |||    
T  64388 tcaggtggtagataaaattaagtccctcgctttcttgtggttgaaggagaaatacccttctctttccttcaattatcatgcttggtggcttagtcctttc 64289  T
Q  124 accttgttaggcatagg 140  Q
    ||| | || ||||||||    
T  64288 accattttgggcatagg 64272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 24516 - 24603
Alignment:
Q  60 gtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttcaccttgttaggcataggctgatag 147  Q
    ||||||||||| |||||||||| |||||||||| ||  ||||| |||||||| ||||| | |||||  | ||||||||||||| ||||    
T  24516 gtggttgaaggcgaaatttccttctcttcccttcaatcatcatagttggtggtttagttcattcactatattaggcataggctaatag 24603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 290999 - 291084
Alignment:
Q  39 gattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtccgttca 124  Q
    ||||||||||||  | | || ||||||||||| |||| |||||| |||  | || ||||| |||| ||||||||||||||||||||    
T  290999 gattaagtctcttacttatatgtggttgaaggcgaaaattcctaatctctctttcaactaccatgcttggtggcttagtccgttca 291084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 2187 - 2251
Alignment:
Q  55 tttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtcc 119  Q
    ||||||||||||||||||||  |  || |||| ||||| || ||||||||||||||||| |||||    
T  2187 tttaggtggttgaaggtgaagctcgcttctctccccttcaattatcatggttggtggctcagtcc 2251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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