View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_125 (Length: 245)
Name: NF2479_high_125
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_125 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 42729323 - 42729560
Alignment:
| Q |
1 |
taaataattaaacaattgatgatgatgaatgaattgaatttgtctaacaaagtatagtatataccaagtcaaagagacttgaacgtcgcttcttgttgat |
100 |
Q |
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| T |
42729323 |
taaataattaagcaattgatgatgatgaatgaattgaatttgtctaacaaagtatagtatataccaagtcaaagagacttgaacgtcgcttcttgttgat |
42729422 |
T |
|
| Q |
101 |
agtagccaatctgagaaagtatttttgagcatggctagcaacttgtgtaggagttcttgaagtgacaaagtttttagagattcctctccagtctcctttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42729423 |
agtagccaatctgagaaagtatttttgagcatggctagcaacttgtgtaggagttcttgaagtgacaaagtttttagagattcctctccagtctcctttt |
42729522 |
T |
|
| Q |
201 |
cctagcttctctaatccaacaagaaacattctgtgctc |
238 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
42729523 |
cctagcttctctaatccaacaaggaacattctgtgctc |
42729560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 34848523 - 34848423
Alignment:
| Q |
123 |
ttttgagcatggctagcaacttgtgtaggagttcttgaagtgacaaagtttttagagattcctctccagtctccttttcctagcttctctaatccaacaa |
222 |
Q |
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|||||||||||||| ||||||||||| || ||||||| ||| ||| ||||| ||||||| || ||||| ||||||||||| |||||||| | |||||||| |
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| T |
34848523 |
ttttgagcatggcttgcaacttgtgttggtgttcttgtagtcacatagtttctagagatacccctccaatctccttttccaagcttctcaagtccaacaa |
34848424 |
T |
|
| Q |
223 |
g |
223 |
Q |
| |
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| |
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|
| T |
34848423 |
g |
34848423 |
T |
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