View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_129 (Length: 240)
Name: NF2479_high_129
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_129 |
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| [»] chr5 (5 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 37164659 - 37164882
Alignment:
| Q |
17 |
actcaaaatgttattactatgtttgaagacattttttctcctggatatgaaggatacgatttatttgcattgatgatgtggaaaggtacagaacgactat |
116 |
Q |
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| T |
37164659 |
actcaaaatgttattactatgtttgaagacattttttctcctggatatgaaggatacgatttatttgcattgatgatgtggaaaggtacagaacgactat |
37164758 |
T |
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| Q |
117 |
tcaagaatgataagctcattttgagaagcattgatctatcaagcaatcaattgacaggagaccttccagaagaaataggaaacttgatagcattggtgtc |
216 |
Q |
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| T |
37164759 |
tcaagaataataagctcattttgagaagcattgatctatcaagcaatcaattgacaggagaccttccagaagaaataggaaacttgatagcattggtgtc |
37164858 |
T |
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| Q |
217 |
attgaatttatcaagcaacaattt |
240 |
Q |
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| T |
37164859 |
attgaatttatcaagcaacaattt |
37164882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 37139335 - 37139511
Alignment:
| Q |
61 |
atatgaaggatacgatttatttgcattgatgatgtggaaaggtacagaacgactattcaagaatgataagctcattttgagaagcattgatctatcaagc |
160 |
Q |
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| T |
37139335 |
atatgaaggctacgatttgattgcattgttgatgtggaaagggacagaacggctattcaagaataataagctcattttgaggagtattgatctatcaagc |
37139434 |
T |
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| Q |
161 |
aatcaattgacaggagaccttccagaagaaataggaaacttgatagcattggtgtcattgaatttatcaagcaacaa |
237 |
Q |
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| T |
37139435 |
aatcaattgataggagacattccagaagaaatagaaaacttgatagagttggtgtcattgaatttatcatgcaacaa |
37139511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 62 - 240
Target Start/End: Complemental strand, 35143166 - 35142988
Alignment:
| Q |
62 |
tatgaaggatacgatttatttgcattgatgatgtggaaaggtacagaacgactattcaagaatgataagctcattttgagaagcattgatctatcaagca |
161 |
Q |
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| T |
35143166 |
tatgaaggctatgatttggttgcattattaatgtggaaaggtgcagcacgactattcaagaataataaactcattttgaggagtattgatctatcaagca |
35143067 |
T |
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| Q |
162 |
atcaattgacaggagaccttccagaagaaataggaaacttgatagcattggtgtcattgaatttatcaagcaacaattt |
240 |
Q |
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| T |
35143066 |
atctattgacaggagacattccggaagaaataggaaacttgatagcattggtgtcattgaatttatcaagcaacaattt |
35142988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 61 - 240
Target Start/End: Original strand, 38748919 - 38749098
Alignment:
| Q |
61 |
atatgaaggatacgatttatttgcattgatgatgtggaaaggtacagaacgactattcaagaatgataagctcattttgagaagcattgatctatcaagc |
160 |
Q |
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| T |
38748919 |
atatgaaggctatgatttctttgcattattgatgtggaaaggtgcagaacgataattcaagaataataagctcattttgagaagtattgatctatcaaac |
38749018 |
T |
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| Q |
161 |
aatcaattgacaggagaccttccagaagaaataggaaacttgatagcattggtgtcattgaatttatcaagcaacaattt |
240 |
Q |
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| T |
38749019 |
aatcaattgataggaaatattccagaagaaataggaaacttgatagagttggtgtcgttgaatttatcaaacaacaattt |
38749098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 90 - 237
Target Start/End: Original strand, 37132278 - 37132425
Alignment:
| Q |
90 |
tgatgtggaaaggtacagaacgactattcaagaatgataagctcattttgagaagcattgatctatcaagcaatcaattgacaggagaccttccagaaga |
189 |
Q |
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| T |
37132278 |
tgatgaggaaaggtgtggaacggcaattcaagaataataagctcattttgaggagtattgatctatcaagaaatcaattgataggagacattccagaaga |
37132377 |
T |
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| Q |
190 |
aataggaaacttgatagcattggtgtcattgaatttatcaagcaacaa |
237 |
Q |
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| T |
37132378 |
aataggaaacttgatagagttggtgtcattgaatttatcaagcaacaa |
37132425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 61 - 240
Target Start/End: Complemental strand, 3022879 - 3022700
Alignment:
| Q |
61 |
atatgaaggatacgatttatttgcattgatgatgtggaaaggtacagaacgactattcaagaatgataagctcattttgagaagcattgatctatcaagc |
160 |
Q |
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| T |
3022879 |
atatgaaggctatgatttgattgcattgttgatgtggaaaggtgcagaacgacaattcaagaataataagctcattttgagaagtattgatctatcaagc |
3022780 |
T |
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| Q |
161 |
aatcaattgacaggagaccttccagaagaaataggaaacttgatagcattggtgtcattgaatttatcaagcaacaattt |
240 |
Q |
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| T |
3022779 |
aatcaattgataggaaatattccagaagaaataggaaacttgatggagttggtgtcgttgaatttatcaaacaacaattt |
3022700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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