View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2479_high_134 (Length: 238)
Name: NF2479_high_134
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_134 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6965235 - 6965014
Alignment:
| Q |
1 |
ttatataaagatagaacaacccaaattattgaacaaacgaaattaagccggcaaaaacctactaacaaaaagttaactaaaactaataacagagggttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6965235 |
ttatataaagatagaacaacccaaattattgaacaaatgaaattaagccggcaaaaacctactaacaaaaagttaactaaaactaataacagagggttgg |
6965136 |
T |
|
| Q |
101 |
atagagcaacaagtgtgaacggttaaagaagatgaaagtcatgggtaaaaacccaaataaagagtaaatattaatgttattaaaatattaaaactaatag |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6965135 |
ttagaccaacaagtgtgaacggttaaagaagatgaaagtcatgggtaaaaacccaaataaagagtaaatattaatgttattaaaatattaaaactaatag |
6965036 |
T |
|
| Q |
201 |
taacagcagaatctaacaattg |
222 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
6965035 |
taatagcagaatctaacaattg |
6965014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University