View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2479_high_143 (Length: 226)
Name: NF2479_high_143
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_143 |
 | |
|
| [»] scaffold0370 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 38637983 - 38638168
Alignment:
| Q |
17 |
caaaggtagacatgatatgaaagaactagaagctataaacagagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38637983 |
caaaggtagacatgatatgaaagaactagaagctataaacagagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagca |
38638082 |
T |
|
| Q |
117 |
tatcaaaggattttgaaattgaaaaaattgcatcacgaggaggtaatgtttttaaaaccataatctatgaatttgatataattgca |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38638083 |
tatcaaaggattttgaaattgaaaaaattgcatcacgaggaggtaatgtttttaaaaccataatctatgaatttgatataattgca |
38638168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 38633944 - 38634082
Alignment:
| Q |
24 |
agacatgatatgaaagaactagaagctataaacagagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagcatatcaaa |
123 |
Q |
| |
|
||||||| | |||||||||||||||| ||||| |||||||||||||||||| || |||||| |||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
38633944 |
agacatggtgtgaaagaactagaagccataaatggagaattatattctttgaaagcaaaattaacagagaatcataagaaaaagggtgaagcatatcaaa |
38634043 |
T |
|
| Q |
124 |
ggattttgaaattgaaaaaattgcatcacgaggaggtaa |
162 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
38634044 |
ggattttaaaattgaaaaacttgcatcatgaggaggtaa |
38634082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 38690649 - 38690730
Alignment:
| Q |
61 |
aattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagcatatcaaaggattttgaaattgaaaaa |
142 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38690649 |
aattatattctttgagtgcaaaattgatagagaagcataagaataaggatgaagcatatcaaaggattttcaaattgaaaaa |
38690730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 45335575 - 45335472
Alignment:
| Q |
58 |
gagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagcatatcaaaggattttgaaattgaaaaaattgcatcacgagga |
157 |
Q |
| |
|
||||| |||||| |||||||||||| |||| |||||| ||||||||||||| ||||||||||||||| ||||| |||| |||||| |||||||| ||||| |
|
|
| T |
45335575 |
gagaactatattatttgagagaaaagttgaaagagaatcataagaaaaagggtgaagcatatcaaagaattttaaaatcgaaaaatttgcatcatgagga |
45335476 |
T |
|
| Q |
158 |
ggta |
161 |
Q |
| |
|
|||| |
|
|
| T |
45335475 |
ggta |
45335472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 13070 - 13167
Alignment:
| Q |
43 |
tagaagctataaacagagaattatattctttgagagaaaaattgacagagaagcataagaaaaaggatgaagcatatcaaaggattttgaaattgaaa |
140 |
Q |
| |
|
||||||| |||||| || |||||||||| |||||||||||||||| ||||| |||| |||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
13070 |
tagaagccataaacggaaaattatattcattgagagaaaaattgaatcagaagtataacaaaaagtatgaagcaaagcaaaggattttgaaattgaaa |
13167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University