View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2479_high_15 (Length: 492)
Name: NF2479_high_15
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 256 - 477
Target Start/End: Complemental strand, 43664251 - 43664031
Alignment:
| Q |
256 |
ttcaaacacatcttaccacaatgcatctacaacaaacnnnnnnnnctaaataatttgacggcaattcctttcttggaatcaaggtcatacatgaccacaa |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43664251 |
ttcaaacacatcttaccacaatgcatctacaacaaacaaaaaaa-ctaaataatttgacggcaattcctttcttggaatcaaggtcatacatgaccacaa |
43664153 |
T |
|
| Q |
356 |
ataatcaaatattgttgtgggataaatatcacaaattttaatgccatgcaactcaaacattataaaatagcacaacaaatatatgattggtggtattgca |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43664152 |
ataatcaaatattgttgtgggataaatatcacaaattttaatgccatgcaactcaaacattataaaatagcacaagaaatatatgattggtggtattgca |
43664053 |
T |
|
| Q |
456 |
gctctagtgccgtgtgaataat |
477 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
43664052 |
gctctagtgccgtgtgaataat |
43664031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 43664559 - 43664425
Alignment:
| Q |
44 |
atgatgcaatttgttttaggttttgaaatgattactgtcataaacttacaaccacaattttttgtatttgaaaataagtaaaaagggtataattatgttt |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43664559 |
atgatgcaatttgttttaggttttgaaatgattactgtcataaacttacaaccacagttttttgtatttgaaaataagtaaaaagggtataattatgttt |
43664460 |
T |
|
| Q |
144 |
gattaattattatagaaaaagtatataacttcaaat |
179 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| |
|
|
| T |
43664459 |
gattaatt-gtatagaaaaagtatataactttaaat |
43664425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 43664361 - 43664276
Alignment:
| Q |
175 |
caaatcgactatggttataattgtgtgcctattttaatatgtaatcatgcatatatttttatttaaccagtaatccactgattcaa |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43664361 |
caaatcgactatggttataattgtgtgcctattttaatatgtaatcatgcatatatttttatttaaccagtaatccactgattcaa |
43664276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University