View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_16 (Length: 473)
Name: NF2479_high_16
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 55 - 346
Target Start/End: Complemental strand, 32149631 - 32149342
Alignment:
| Q |
55 |
aacaatttggtttaagattttatttctgatccgtaatattaaaaaccatttcttaaaagatatcaaccctttaattaatctcaattaaatatcaaccctt |
154 |
Q |
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| T |
32149631 |
aacaatttagtttaagattttatttctgatccgtaatattaaaaatcatttcttaaaagatatcaaccctttaattaatctcaattaaatatcaaccctt |
32149532 |
T |
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| Q |
155 |
tactataccaaaaataatggttagacaaccactttcagcaacatcatgtggtctttcctt----nnnnnnnnnnnnntcaagatcacgtggtttcgatct |
250 |
Q |
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| T |
32149531 |
tactataccaaaaataatggttagacaaccacaatcaccaagatcatgtggtctttccttaaaaaaaaaaagaaaaataaagatcacgtggtttcgatct |
32149432 |
T |
|
| Q |
251 |
aaatgaatatataattggaaaaataaaattatctacttgataaattctatatgtaaacagactgcatcgaatcggaaacttcatcaaattatacta |
346 |
Q |
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| T |
32149431 |
aaatga------aattgaaaaaataaaattatctacttaataaattatgtatgtaaacaaactgcagcgaatcggaaacttcattaaataatacta |
32149342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 48822691 - 48822794
Alignment:
| Q |
21 |
gtcactctacaatagaagtgcctacaatacaataaacaatttggtttaagattttatttctgatccgtaatattaaaaaccatttcttaaaagatatcaa |
120 |
Q |
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|||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |||||||||||||| |
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| T |
48822691 |
gtcattctacaatagaagttcctacaataaaataaacaatttggtttaagattttatttctaatccataata-taaaaaccatttattaaaagatatcaa |
48822789 |
T |
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| Q |
121 |
ccctt |
125 |
Q |
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| T |
48822790 |
ccctt |
48822794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 332
Target Start/End: Original strand, 48823086 - 48823191
Alignment:
| Q |
229 |
caagatcacgtggtttcgatctaaatgaatat-ata-attggaaaaataaaattatctacttgataaattctatatgtaaacagactgcatcgaatcgga |
326 |
Q |
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| T |
48823086 |
caagatcacgtggtttcgatctaaatgaatatgatataatgaaaaaagtatattatctacttaataaattatgtatgtaaacagactgcagcgaatcaga |
48823185 |
T |
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| Q |
327 |
aacttc |
332 |
Q |
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|||||| |
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| T |
48823186 |
aacttc |
48823191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 48823021 - 48823070
Alignment:
| Q |
162 |
ccaaaaataatggttagacaaccactttcagcaacatcatgtggtctttcct |
213 |
Q |
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| T |
48823021 |
ccaaaaataatggttag-caac-actttcagcaagatcatgtggtctttcct |
48823070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 4058849 - 4058796
Alignment:
| Q |
158 |
tataccaaaaataatggttagacaaccactttcagcaacatcatgtggtctttc |
211 |
Q |
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| T |
4058849 |
tatacaaaaaataatggttagacaaccactttcagcaagattatgtggtctttc |
4058796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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