View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_17 (Length: 473)
Name: NF2479_high_17
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 41996006 - 41995733
Alignment:
| Q |
1 |
attcttcaagttattgagaaagatttcacaacttcgaaaggaaatgagttttaaaattagaaaaatatcaattcatatcgactcttcgagtcatgatgta |
100 |
Q |
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| T |
41996006 |
attcttcaagttattgagaaagatttcacaacttcaaaaggaaatgagttttaaaattagaaaaatatcaatccatattgactcttcgagtcatgatgta |
41995907 |
T |
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| Q |
101 |
tgagtatcacaattcttcctccaacattataattttttaggaattaatttgaatttaaagttaaattagacgaggctgaaacaatctcatcgaatcgatc |
200 |
Q |
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| T |
41995906 |
tgagtatcaaaattcttcctccaacattataattttttaggaattaatttgaatttaaagttaaattagacgaggctgaaacaatctcatcgaatcgatc |
41995807 |
T |
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| Q |
201 |
aagttctcttgatagtcaataccttaacttctattgaatatttttgcatttggtttaaagtaatatgggtgttt |
274 |
Q |
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| T |
41995806 |
aagttctcttgatagtcaataccttaacttctatcgaatatttttgcatttggtttaaagtaatatgggtgttt |
41995733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 307 - 455
Target Start/End: Complemental strand, 41995700 - 41995552
Alignment:
| Q |
307 |
cccataaaattgaatcaaaccgaaccgttcataaaatttcaagttcaacctagaactttttcctcgtcnnnnnnnncttagaattctatctgtttatata |
406 |
Q |
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| T |
41995700 |
cccataaaattgaatcaaaccgaaccgttcataaaatttcaagttcaacctaaaactttttcctcgtcgaaagaaacttagaattctatctgtttatata |
41995601 |
T |
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| Q |
407 |
cgctcttcannnnnnnacatgtcgtgtcttttc-tttttaaagaacatgt |
455 |
Q |
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| T |
41995600 |
ctgtcttca-ttttttacatgccgtgtcttttcttttttaaagaacatgt |
41995552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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