View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_2 (Length: 808)
Name: NF2479_high_2
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 727; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 13 - 791
Target Start/End: Complemental strand, 2090764 - 2089986
Alignment:
| Q |
13 |
catcacactcgcctatcattatctttatcaattcttcttgataatcataatcactctttaaatggagggtaaaatttttagaaagaagaggacaatgggg |
112 |
Q |
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| T |
2090764 |
catcacactcgcctatcattatctttatcaattcttcttgataatcataatcactctttaaatggagggtaaaatttttagaaagaagaggacaatgggg |
2090665 |
T |
|
| Q |
113 |
ataaggaagcctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggatcaatcaaaggctatgtgtg |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2090664 |
ataaggaagcctaaatccttattcaaccatctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggatcaatcaaaggctatgtgtg |
2090565 |
T |
|
| Q |
213 |
tctcgcactcatggcgtaatcgcattctaatcacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttcccctcacccatttta |
312 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2090564 |
tctcgcactcatggcgtaatcgcatcctaaccacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttcccctcacccatttta |
2090465 |
T |
|
| Q |
313 |
tggcctagaacaattttttaattggtgctcattagtgatgtgttgcaatgtcagttcaagaaatattatagacacatgcaatgggttattcttgttttgc |
412 |
Q |
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| T |
2090464 |
tggcctacaacaattttttaattggtgctcattagtgatgtgttgcaatgtaagttcaagaaatattatagacacatgcaatgggttattcttgttttgc |
2090365 |
T |
|
| Q |
413 |
cataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaaacaatgtgtggctattttgaagccttctg |
512 |
Q |
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| T |
2090364 |
cataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaaacaatgtgtggctattttgaagccttctg |
2090265 |
T |
|
| Q |
513 |
gacaattttttggaggaaattcatatgctgctctggcatatgacccttcagaatcttggttctttaagattgtacatttccaagatcatggccatattaa |
612 |
Q |
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| T |
2090264 |
gacaattttttggaggaaattcatatgctgctctggtatatgacccttcagaatcttggttcttcaagattgtacattttcaggatcatggccatattaa |
2090165 |
T |
|
| Q |
613 |
cattttctcctctatgactggcctttggacgaccttgactatcaattttcttcaatatatcaatgagtcttactgggtcagaaaatcgatttatctaaaa |
712 |
Q |
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| T |
2090164 |
tattttctcctctatgaccggcctttggacgaccttgactatcaattttcttcaatatatcaatgagtcttactgggtcaggaaatcggtttatctaaaa |
2090065 |
T |
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| Q |
713 |
ggatctatttaccgactctcctgttcaggacaatatttattgaaaattaaagttgatcctcaagagaatgcctcgaatc |
791 |
Q |
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| T |
2090064 |
ggatctatttaccgactctcctgttcaggacaatatttattgaaaattaaagttgatcctcaagagaatgcctcgaatc |
2089986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 384 - 650
Target Start/End: Original strand, 2878944 - 2879210
Alignment:
| Q |
384 |
acacatgcaatgggttattcttgttttgccataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaa |
483 |
Q |
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| T |
2878944 |
acacatgcaatggcttactattgttttgccacaatgatggtgaggctaccaacatcttgcgtggtgtctattattactatgtcctgaatccagtcacaaa |
2879043 |
T |
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| Q |
484 |
acaatgtgtggctattttgaagccttctggacaattttttggaggaaattcatatgctgctctggcatatgacccttcagaatcttggttctttaagatt |
583 |
Q |
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| T |
2879044 |
acaatgtgtgactgttatgaagcccataggacaaacctctggtgggtattcatatgctgctctggcatatgaccctgcagaatcttggtttttcaagatt |
2879143 |
T |
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| Q |
584 |
gtacatttccaagatcatggccatattaacattttctcctctatgactggcctttggacgaccttga |
650 |
Q |
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|| | ||| || | || | | ||| | |||||||||||||| ||||||| ||||||||| |||| |
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| T |
2879144 |
gtgcgttttcagggtcttcgtcatgtgaacattttctcctccgtgactggtaattggacgacattga |
2879210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 249
Target Start/End: Original strand, 2878654 - 2878809
Alignment:
| Q |
94 |
aaagaagaggacaatggggataaggaagcctaaatccttattcaaccgtctccccacagagcttcaaacaaaaatctttggtgggctatctatgaaggat |
193 |
Q |
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||||||||| || ||||||| ||||||||| | |||||| |||||| |||||||| | | ||||||| ||||| ||| || || | || || ||||| |
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| T |
2878654 |
aaagaagagaactatggggaaaaggaagcccagatccttcttcaacaatctccccataaatattcaaacgaaaatattttgtaggttgtcgttggaggat |
2878753 |
T |
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| Q |
194 |
caatcaaaggctatgtgtgtctcgcactcatggcgtaatcgcattctaatcacaac |
249 |
Q |
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|||||||| ||||||||||||||| | ||||||||||| | |||||| |||||| |
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| T |
2878754 |
caatcaaaagctatgtgtgtctcgaatgaatggcgtaatcacgttctaaacacaac |
2878809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 2727373 - 2727332
Alignment:
| Q |
187 |
gaaggatcaatcaaaggctatgtgtgtctcgcactcatggcg |
228 |
Q |
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| T |
2727373 |
gaaggatcaatcaaaagctatgtgtgtctcacactcatggcg |
2727332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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