View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_23 (Length: 448)
Name: NF2479_high_23
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Original strand, 12702851 - 12703271
Alignment:
| Q |
18 |
aaattgcgcccgaggccatagagattttgaacaccgaaaggcatcggtcttctgtttcttggagacatgctttgcttctatcttcactgaactaaataac |
117 |
Q |
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| T |
12702851 |
aaattgcgcccgaggccatagagattttgaacaccgaaaggcatcggtcttctgtttcttggagacatgctttgcttctatcttcactgaactaaataac |
12702950 |
T |
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| Q |
118 |
caatcttgatccaatgcatcaaatagttcatatgctatcggctgaatgtgaagtaaggatttgtacaatgattccacgcatcgactttcatcatcaactg |
217 |
Q |
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| T |
12702951 |
caatcttgatccaatgcatcaaatagttcatatgctatcggctgaatgtgaagtaaggatttgtacagtgattccacgcatcgactttcatcatcaactg |
12703050 |
T |
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| Q |
218 |
ttttatttgctgctaaagcatcaacaggaaccaaattctgcaatggtttgcaaactttggaagcagaatttctatgaa---gctgattgggggtctcaac |
314 |
Q |
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| T |
12703051 |
ttttatttgcttctagagcatcaactggaaccaaattctgcaatggtttgcaaactttggaagcagaatttctatgaagctgctgattgggggtctcaac |
12703150 |
T |
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| Q |
315 |
tttcgtgagcggacgatcaattcttctagtttcttgagtgagtgaatctccaattccaacacttgttgaacaagacccaaattgaaatccttgtttggat |
414 |
Q |
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| T |
12703151 |
tttcgtgagcggacgatcaattcttctagtttcttgagtgagtgaatctccaattccaacacttgttgaacaagacccaaattgaaatccttgtttggat |
12703250 |
T |
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| Q |
415 |
ttctcaggttcgctatgtttc |
435 |
Q |
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| T |
12703251 |
ttctcaggttcgctatgtttc |
12703271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 39 - 318
Target Start/End: Original strand, 8206663 - 8206942
Alignment:
| Q |
39 |
agattttgaacaccgaaaggcatcggtcttctgtttcttggagacatgctttgcttctatcttcactgaactaaataaccaatcttgatccaatgcatca |
138 |
Q |
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| T |
8206663 |
agattttgagcactgaaaggcatcagtcttctgtttcttcgagatgggtattgtttctttcggtactgagctaaataaccaatcttgatccaatggaccc |
8206762 |
T |
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| Q |
139 |
aatagttcatatgctatcggctgaatgtgaagtaaggatttgtacaatgattccacgcatcgactttcatcatcaactgttttatt---tgctgctaaag |
235 |
Q |
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| T |
8206763 |
aa---ttcatatgttatcggctgaatgtgaagtaaggatttatacaatgaatccatccttcgactttcatcatcaacagtctcatttgctgctgctacag |
8206859 |
T |
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| Q |
236 |
catcaacaggaaccaaattctgcaatggtttgcaaactttggaagcagaatttctatgaagctgattgggggtctcaactttc |
318 |
Q |
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| T |
8206860 |
catcaacaggaaccacattcggcaatggtttacaaactttgggagcagatttcccatggtgctgacttggggtctcagctttc |
8206942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 322 - 435
Target Start/End: Original strand, 8207045 - 8207158
Alignment:
| Q |
322 |
agcggacgatcaattcttctagtttcttgagtgagtgaatctccaattccaacacttgttgaacaagacccaaattgaaatccttgtttggatttctcag |
421 |
Q |
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||||||||||||||||| ||||| ||| ||| || |||||| | | || ||||||| ||||||||||||| |||||| || |||||||||||| ||||| |
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| T |
8207045 |
agcggacgatcaattctgctagtatctcgaggaagcgaatctgctactctaacacttcttgaacaagaccccaattgacatacttgtttggattcctcag |
8207144 |
T |
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| Q |
422 |
gttcgctatgtttc |
435 |
Q |
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|||| | ||||||| |
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| T |
8207145 |
gttcacgatgtttc |
8207158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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