View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_29 (Length: 413)
Name: NF2479_high_29
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 147 - 399
Target Start/End: Original strand, 47588600 - 47588853
Alignment:
| Q |
147 |
catgcactatttgttttcaatgaaaatttattgaatgcttttttcattttcttctaaaaatgaaagg-aaaaaatcatattattattttaaaatatagag |
245 |
Q |
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| T |
47588600 |
catgcactatttgttttcaatgaaaatttattgaatgcttttttcattttcttctaaaaatgaaaggaaaaaaatcatattattattttaaaatatagag |
47588699 |
T |
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| Q |
246 |
aaatatcgttcaacattcaaatatattttttctttnnnnnnnnntttaaatatatttttggatataaaatgacaaagattttgcactctttaacatttta |
345 |
Q |
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| T |
47588700 |
aaatatcgttcaacattcaaatatattttttctttaaaaaaaaatttaaatatatttttggatataaaatgacatagattttgcactctttaacatttta |
47588799 |
T |
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| Q |
346 |
cttagtttggtcataactatgttatcagtttatcatttagatattgacgtgttt |
399 |
Q |
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| T |
47588800 |
cttagtttggtcataactatgttattagtttatcatttagatattgatgtgttt |
47588853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 47588511 - 47588562
Alignment:
| Q |
59 |
tcaagtgagttgtaaaattgtatttattttggacgggacgctatcctttcac |
110 |
Q |
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| T |
47588511 |
tcaagtgagttgtaaaattgtatttattttggaccggacgctatcctttcac |
47588562 |
T |
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