View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_3 (Length: 664)
Name: NF2479_high_3
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 33 - 640
Target Start/End: Original strand, 33759004 - 33759610
Alignment:
| Q |
33 |
ttataacatgcagcaacattttttacgtacaaaaatgcatttcaattacagatcagttcaatcctatctatgttaaataagaaataaattaaatttgtaa |
132 |
Q |
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| T |
33759004 |
ttataacatgcaggaacattttttacgtacaaaaatgcatttcaattacagatcagttcaatcctatctatgttaaataagaaataaattaaatttgtaa |
33759103 |
T |
|
| Q |
133 |
nnnnnnnagctcaacttccttaaaattgtacttggatttattttacccgagagattaaggagtatcggaattagtataagtgtaatatattattttatag |
232 |
Q |
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| T |
33759104 |
tttttttagctcaacttccttaaaattgtacttggatttattttacccgagagagtaaggagtatcggaattagtataagtgtaatatattattttatag |
33759203 |
T |
|
| Q |
233 |
tagtataaatagagattaggctatagatgaaaaggaaaagcaattaatattttccatgtgtcaaaagcgatatggtatatgtctttagtagctctcattc |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33759204 |
tagtataaatagagattaggctatagatgaaaaggaaaagcaattaatattttccatgtgtcaaaagcgatatggtatatgtctttagtagctctcattc |
33759303 |
T |
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| Q |
333 |
atcatttttgtttctcataaaaatatgatctgatttgtttgtatcaaatcatttaattatatttcactatgaagatgccttttttgttattatcatatta |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| |
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| T |
33759304 |
atcatttttgtttctcataaaaatatgatctgatttgtttgtatcaaatcatttaattatatttcactgtgatgat-ccttttttgttattatcatatta |
33759402 |
T |
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| Q |
433 |
gtagtttgattctatcttcaatatgtggtcgaactcgaatgtttgattcagatctcatgcttatgatcaaattcactatttgaaaaaggcaattcataga |
532 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33759403 |
gtagtttgattctatcttcaatatgtggtcgaactcgaatgtttgattcagatctcatgcttatgatcaaattcactatttgaaaaaggcaattcataga |
33759502 |
T |
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| Q |
533 |
tgcatttcaggtcatcggaagaaaatagtctttagagttgaacatagatattatgtggtaatttgataatcactctgctggtaatctctgcttttattct |
632 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33759503 |
tgcatttcaggtcatcggaagaaaatagtctttagagttgaacatagatattatgtggtaatttgataatcactctgctggtaatctctgcttttattct |
33759602 |
T |
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| Q |
633 |
gagtggat |
640 |
Q |
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|||||||| |
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| T |
33759603 |
gagtggat |
33759610 |
T |
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