View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2479_high_33 (Length: 406)
Name: NF2479_high_33
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_33 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 162 - 338
Target Start/End: Original strand, 22579732 - 22579908
Alignment:
| Q |
162 |
tttgggatatacaacatgctaattgactagtttctgatctcgtcattcacgaagatatataagacttgacatattccatttatttcttcggtttttgatc |
261 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
22579732 |
tttgggatatacaacatgctaattgacgagtttctgatctcgtcattcacgaagatatataagagttgacatattccatttatttcttctgtttttgatc |
22579831 |
T |
|
| Q |
262 |
ttggacttgtggataaatttccaaataatctttcttattcttctagttgactcccctcatttaaaagtgaagtattg |
338 |
Q |
| |
|
| ||| ||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
22579832 |
tgggaattgtggataaatttccaaatactccttcctattcttctagttgactcctctcatttcaaagtgaagtattg |
22579908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 22579537 - 22579680
Alignment:
| Q |
20 |
tattggagatatcatatcatagtgacataaaaaatgaaagtgggat---aaataagtctagttttgtttggagaacaatttgtaattcaaagtttatcct |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22579537 |
tattggagatatcatatcatagtgacataaaaaatgaaagtgagatcataaataagtgtagttttgtttggagaacaatttgtaattcaaagtttatcct |
22579636 |
T |
|
| Q |
117 |
agtgttggttgtagatagagattggagatggaaatgatatttct |
160 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22579637 |
agtgttggttgtagatggagattggagatggaaatgatatttct |
22579680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University