View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2479_high_37 (Length: 394)

Name: NF2479_high_37
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2479_high_37
NF2479_high_37
[»] chr5 (2 HSPs)
chr5 (62-331)||(33827440-33827727)
chr5 (171-247)||(11128885-11128961)
[»] chr1 (3 HSPs)
chr1 (62-264)||(47833836-47834039)
chr1 (265-315)||(47833768-47833818)
chr1 (206-250)||(2079112-2079156)
[»] chr6 (4 HSPs)
chr6 (70-262)||(353035-353228)
chr6 (116-264)||(14802806-14802959)
chr6 (130-264)||(12273618-12273753)
chr6 (134-231)||(31405638-31405736)
[»] chr2 (3 HSPs)
chr2 (62-264)||(27648380-27648581)
chr2 (72-264)||(36338849-36339041)
chr2 (130-323)||(44686131-44686342)
[»] chr3 (4 HSPs)
chr3 (62-264)||(53833835-53834038)
chr3 (62-264)||(53837433-53837636)
chr3 (130-264)||(24734262-24734397)
chr3 (206-264)||(3083795-3083853)
[»] chr8 (2 HSPs)
chr8 (132-264)||(15051542-15051673)
chr8 (169-264)||(30181945-30182042)
[»] chr4 (2 HSPs)
chr4 (105-184)||(54572967-54573047)
chr4 (213-264)||(54572900-54572951)
[»] chr7 (3 HSPs)
chr7 (215-261)||(4648282-4648328)
chr7 (116-158)||(30966665-30966707)
chr7 (144-264)||(38787100-38787219)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 62 - 331
Target Start/End: Complemental strand, 33827727 - 33827440
Alignment:
Q  62 taataagtaacaagaaatattagcatcaaattaatagaactctaaatataatataatagagaacaggtaaacttatcgattattgactgaggcgtgcacg 161  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| | |||||||||||||||||||    
T  33827727 taataagtaataagaaatattagcatcaaattaatagaactctaaatataatagaatagagaacaagtaaatttatcggtcattgactgaggcgtgcacg 33827628  T
Q  162 aagcac-gggcttaagagtatttcgccactccggataagttaaccgatgcgataggtctcatagctaatactctccaggatacaatagtcgcttcttgc- 259  Q
    |||||| |||||||||||||||| ||||| |||||| | | | | ||||||||||||||||||| |||||||||||||||||||| | |||||||||||     
T  33827627 aagcactgggcttaagagtattttgccaccccggatgaatcacctgatgcgataggtctcatagataatactctccaggatacaacaatcgcttcttgct 33827528  T
Q  260 ----------------tagcaaggtctcaggaaccacttatggatgctcttcggaacttataatttgttattagtgactataatgaaa 331  Q
                    ||||||||||||| ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  33827527 agcaccgcacgtggattagcaaggtctcaagaatcacttatggatgctcttgggaacttataatttattattagtgactataatgaaa 33827440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 11128885 - 11128961
Alignment:
Q  171 cttaagagtatttcgccactccggataagttaaccgatgcgataggtctcatagctaatactctccaggatacaata 247  Q
    ||||||||||||| |||||  |||||   | | |||||||| | ||||||||||||| || ||||||||||||||||    
T  11128885 cttaagagtattttgccaccacggatggatcatccgatgcggttggtctcatagctagtattctccaggatacaata 11128961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 62 - 264
Target Start/End: Complemental strand, 47834039 - 47833836
Alignment:
Q  62 taataagtaacaagaaatattagcatcaaattaatagaactctaaatataatataatagagaacaggtaaacttatcgattattgactgaggcgtgcacg 161  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| |    
T  47834039 taataagtaacgagaaatattagcatcaaattaatagatctctaaatataatagaatagagaacaagtaaacttatcgattattgactgaggcatgcatg 47833940  T
Q  162 aagca-cgggcttaagagtatttcgccactccggataagttaaccgatgcgataggtctcatagctaatactctccaggatacaatagtcgcttcttgct 260  Q
    |||||  |||||||||||||||||||||| |||||| | | | ||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  47833939 aagcattgggcttaagagtatttcgccaccccggatgaatcatccgatgcaataggtctcatagctaatactctccagaatacaacagtcgcttcttgct 47833840  T
Q  261 agca 264  Q
    ||||    
T  47833839 agca 47833836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 47833818 - 47833768
Alignment:
Q  265 aggtctcaggaaccacttatggatgctcttcggaacttataatttgttatt 315  Q
    ||||||||| |||||||||||||||||| | ||||||||||||||||||||    
T  47833818 aggtctcagaaaccacttatggatgctcatgggaacttataatttgttatt 47833768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 2079112 - 2079156
Alignment:
Q  206 gatgcgataggtctcatagctaatactctccaggatacaatagtc 250  Q
    |||||| | |||||||||||||||| |||||||||||||| ||||    
T  2079112 gatgcggttggtctcatagctaatattctccaggatacaacagtc 2079156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 70 - 262
Target Start/End: Complemental strand, 353228 - 353035
Alignment:
Q  70 aacaagaaatattagcatcaaattaatagaactctaaatataatataatagagaacaggtaaacttatcgattattgactgaggcgtgcacgaagcac-g 168  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| | ||||||| |||||||||||||||||||||||||||||||| |    
T  353228 aacaagaaatattagcatcaaattaatagaattctaaatacaatagaatagagaataagtaaactcatcgattattgactgaggcgtgcacgaagcactg 353129  T
Q  169 ggcttaagagtatttcgccactccggataagttaaccgatgcgataggtctcatagctaatactctccaggatacaatagtcgcttcttgctag 262  Q
    ||||||||||||||||||||| ||| |||  ||| |||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||    
T  353128 ggcttaagagtatttcgccaccccgaatagattatccgatgcgataggtctcacagctaatactctccaggatacaataatcacttcttgctag 353035  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 264
Target Start/End: Complemental strand, 14802959 - 14802806
Alignment:
Q  116 aatagagaacaggtaaacttatcgattattgactgaggcgtgcacgaagcac-gggcttaagagtat----ttcgccactccggataagttaaccgatgc 210  Q
    ||||||||| ||  ||||||||||||||||| ||||||| ||||| || ||| ||| ||||||||||    || |||||  |  ||||||||  ||||||    
T  14802959 aatagagaatagaaaaacttatcgattattggctgaggcatgcacaaaacactgggtttaagagtatatattttgccacctcaaataagttattcgatgc 14802860  T
Q  211 gataggtctcatagctaatactctccaggatacaatagtcgcttcttgctagca 264  Q
    ||||| ||| ||||||||||||||||||||||||| |  | |||||||||||||    
T  14802859 gatagatctgatagctaatactctccaggatacaacaaccacttcttgctagca 14802806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 264
Target Start/End: Complemental strand, 12273753 - 12273618
Alignment:
Q  130 aaacttatcgat--tattgactgaggcgtgcacgaagcac-gggcttaagagtatttcgccactccggataagttaaccgatgcgataggtctcatagct 226  Q
    ||||||||||||  |||||| |||||||||||  | |||| |||||||||||||||| ||||  ||||||   | | || |||||||||||||||||| |    
T  12273753 aaacttatcgatattattgattgaggcgtgca--atgcaccgggcttaagagtattttgccatcccggatggatcacccaatgcgataggtctcatagtt 12273656  T
Q  227 aatactctccaggatacaatagtcgcttcttgctagca 264  Q
    ||||||||  ||||||||| | || |||||||||||||    
T  12273655 aatactctttaggatacaacaatcacttcttgctagca 12273618  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 31405638 - 31405736
Alignment:
Q  134 ttatcgattattgactgaggcgtgcacgaagcacgg-gcttaagagtatttcgccactccggataagttaaccgatgcgataggtctcatagctaatac 231  Q
    |||||||||||||| |||| ||||||  | |||  | |||||||||||||||||||||||| |||  ||| |||||||  |||||||||||||||||||    
T  31405638 ttatcgattattgagtgagacgtgcaaaatgcattgagcttaagagtatttcgccactccgaatagattatccgatgcagtaggtctcatagctaatac 31405736  T

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Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 62 - 264
Target Start/End: Complemental strand, 27648581 - 27648380
Alignment:
Q  62 taataagtaacaagaaatattagcatcaaattaatagaactctaaatataatataatagagaacaggtaaacttatcgattattgactgaggcgtgcacg 161  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| |      
T  27648581 taataagtaacaagaaatattagcatcaaattaatagagctctaaatataatagaatagagaacaagtaaacttatcgattattgattgaggcgtgga-- 27648484  T
Q  162 aagca-cgggcttaagagtatttcgccactccggataagttaaccgatgcgataggtctcatagctaatactctccaggatacaatagtcgcttcttgct 260  Q
    | |||  || ||||| |||||||||||||   |||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27648483 atgcattggacttaaaagtatttcgccaccttggataaattatccgatgcgataggtctcatagctaatactctccaggatacaacagtcgcttcttgct 27648384  T
Q  261 agca 264  Q
    ||||    
T  27648383 agca 27648380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 72 - 264
Target Start/End: Original strand, 36338849 - 36339041
Alignment:
Q  72 caagaaatattagcatcaaattaatagaactctaaatataatataatagagaacaggtaaacttatcgattattgactgaggcgtgcacgaagcacgggc 171  Q
    |||||| ||||||||||||||||||||||||||||||| |||| ||||||||| | ||||||||||||| |||||||||||||||||||||||||| ||     
T  36338849 caagaattattagcatcaaattaatagaactctaaatacaatagaatagagaatatgtaaacttatcgaatattgactgaggcgtgcacgaagcactggt 36338948  T
Q  172 ttaagagtatttcgccactccggataagttaaccgatgcgataggtctcatagctaatactctccaggatacaatagtcgcttcttgctagca 264  Q
    |||||||||||||||||   || ||| |||| |||||||  ||| |||| | |||| ||||||||||||||||| ||||  ||||||||||||    
T  36338949 ttaagagtatttcgccatctcgaataggttacccgatgcagtagatctcgtggctagtactctccaggatacaacagtcagttcttgctagca 36339041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 130 - 323
Target Start/End: Original strand, 44686131 - 44686342
Alignment:
Q  130 aaacttatcgattattgactgaggcgtgcacgaagcac-gggcttaagagtatttcgccactccggataagttaaccgatgcgataggtctcatagctaa 228  Q
    |||||| |||||||||||||||||| ||||  | |||| ||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  44686131 aaacttctcgattattgactgaggcatgcaaaatgcactgggcttaagagtatttcgccacctcggataagttatccgatgcgataggtctcatagctaa 44686230  T
Q  229 tactctccaggatacaatagtcgcttcttgc-----------------tagcaaggtctcaggaaccacttatggatgctcttcggaacttataatttgt 311  Q
    ||||||||||||||||| |||||||||||||                 ||||||||||||||||| ||||||||||||||  | ||||||||||||||||    
T  44686231 tactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaatcacttatggatgcttatgggaacttataatttgt 44686330  T
Q  312 tattagtgacta 323  Q
    ||||||||||||    
T  44686331 tattagtgacta 44686342  T

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Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 62 - 264
Target Start/End: Original strand, 53833835 - 53834038
Alignment:
Q  62 taataagtaacaagaaatattagcatcaaattaatagaactctaaatataatataatagagaacaggtaaacttatcgattattgactgaggcgtgcacg 161  Q
    ||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||  ||||||||||| |    
T  53833835 taataagcaataagaaatattaacatcaaattaatagaactctaaatataatataatagagaacaactaaacttatcgattattggttgaggcgtgcatg 53833934  T
Q  162 aagcac-gggcttaagagtatttcgccactccggataagttaaccgatgcgataggtctcatagctaatactctccaggatacaatagtcgcttcttgct 260  Q
    |||||| ||||| |||||||||| ||||  |||||||| | | ||||||||||||||||||||||||||||||| |||||||||| | || |||||| ||    
T  53833935 aagcactgggctgaagagtattttgccatcccggataaataacccgatgcgataggtctcatagctaatactctgcaggatacaacaatcacttcttcct 53834034  T
Q  261 agca 264  Q
    ||||    
T  53834035 agca 53834038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 62 - 264
Target Start/End: Original strand, 53837433 - 53837636
Alignment:
Q  62 taataagtaacaagaaatattagcatcaaattaatagaactctaaatataatataatagagaacaggtaaacttatcgattattgactgaggcgtgcacg 161  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |    
T  53837433 taataagcaataagaaatattagcatcaaattaatagaactctaaacataatagaatagagaacaagtaaacttatcgattattgactgaggcgtgcatg 53837532  T
Q  162 aagca-cgggcttaagagtatttcgccactccggataagttaaccgatgcgataggtctcatagctaatactctccaggatacaatagtcgcttcttgct 260  Q
    ||| |  ||||||||||||||||||||||  ||||| | | | |||||||||||| |||||||| ||||||||| |||||||||| | || ||| |||||    
T  53837533 aagtattgggcttaagagtatttcgccacctcggatgaatcatccgatgcgatagatctcatagttaatactctgcaggatacaacaatcactttttgct 53837632  T
Q  261 agca 264  Q
    ||||    
T  53837633 agca 53837636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 130 - 264
Target Start/End: Original strand, 24734262 - 24734397
Alignment:
Q  130 aaacttatcgattattgactgaggcgtgcacgaagcacggg-cttaagagtatttcgccactccggataagttaaccgatgcgataggtctcatagctaa 228  Q
    ||||||||| |||||||||||||| ||||||||||||| |  |||||||||| |||||||| || |||| |||| | |||||  ||||||||||||||||    
T  24734262 aaacttatcaattattgactgaggtgtgcacgaagcaccgaacttaagagtacttcgccaccccagataggttatctgatgcagtaggtctcatagctaa 24734361  T
Q  229 tactctccaggatacaatagtcgcttcttgctagca 264  Q
    ||||||||||||||||| |||| | |||| ||||||    
T  24734362 tactctccaggatacaacagtcacatcttactagca 24734397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 3083853 - 3083795
Alignment:
Q  206 gatgcgataggtctcatagctaatactctccaggatacaatagtcgcttcttgctagca 264  Q
    ||||||||||||||||||||||||||||| ||| |||||  |||| |||||||||||||    
T  3083853 gatgcgataggtctcatagctaatactcttcagaatacagcagtcacttcttgctagca 3083795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 264
Target Start/End: Complemental strand, 15051673 - 15051542
Alignment:
Q  132 acttatcgattattgactgaggcgtgcacgaagcac-gggcttaagagtatttcgccactccggataagttaaccgatgcgataggtctcatagctaata 230  Q
    ||||||||||||||||||||| ||||||  | |||  ||| |||||||||||||||||  |||||||||||| |||||||||||| ||||||||||||||    
T  15051673 acttatcgattattgactgagacgtgca--atgcattgggtttaagagtatttcgccatcccggataagttatccgatgcgatagatctcatagctaata 15051576  T
Q  231 c-tctccaggatacaatagtcgcttcttgctagca 264  Q
    | ||||||| ||| || ||||||||||||||||||    
T  15051575 cttctccagaata-aacagtcgcttcttgctagca 15051542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 30181945 - 30182042
Alignment:
Q  169 ggcttaagagtatttcgccactccggataagttaaccgatgcgat--aggtctcatagctaatactctccaggatacaatagtcgcttcttgctagca 264  Q
    ||||||||||||||||||||    |||||||||| ||||||||    ||||||||| |||| |||||| || ||||||| |||| |||||||||||||    
T  30181945 ggcttaagagtatttcgccatcagggataagttacccgatgcgcggcaggtctcattgctagtactctgcaagatacaacagtcacttcttgctagca 30182042  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 54573047 - 54572967
Alignment:
Q  105 aaatataatataatagagaacaggtaaacttatcgattattgactgaggcgtgcacgaagcac-gggcttaagagtatttc 184  Q
    ||||| |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  54573047 aaatacaatagaatagagaataagtaaacttatcgattattgactgaggcgtgcacgaagcactggacttaagagtatttc 54572967  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 54572951 - 54572900
Alignment:
Q  213 taggtctcatagctaatactctccaggatacaatagtcgcttcttgctagca 264  Q
    ||||||||||||||||||| ||||| ||||||| |||| | |||||||||||    
T  54572951 taggtctcatagctaataccctccaagatacaaaagtcacatcttgctagca 54572900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 4648282 - 4648328
Alignment:
Q  215 ggtctcatagctaatactctccaggatacaatagtcgcttcttgcta 261  Q
    ||||||||||||| |||||| |||||||||| |||| ||||||||||    
T  4648282 ggtctcatagctagtactcttcaggatacaacagtcacttcttgcta 4648328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 30966707 - 30966665
Alignment:
Q  116 aatagagaacaggtaaacttatcgattattgactgaggcgtgc 158  Q
    ||||||||| ||| ||||||||||||||||||||||| |||||    
T  30966707 aatagagaataggaaaacttatcgattattgactgagacgtgc 30966665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 264
Target Start/End: Complemental strand, 38787219 - 38787100
Alignment:
Q  144 ttgactgaggcgtgcacgaagcacggg-cttaagagtatttcgccactccggataagttaaccgatgcgataggtctcatagctaatactctccaggata 242  Q
    ||||||||||||||||  | |||| || ||||||||||||||| ||| | ||||   ||| |||||||  ||||||  |||| || ||||||||||||||    
T  38787219 ttgactgaggcgtgcaaaatgcactggacttaagagtatttcgtcaccctggattgattatccgatgcagtaggtc--atagttagtactctccaggata 38787122  T
Q  243 caatagtcgcttcttgctagca 264  Q
    ||| |||| | |||||||||||    
T  38787121 caacagtcacatcttgctagca 38787100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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