View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2479_high_39 (Length: 387)
Name: NF2479_high_39
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_39 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 25745273 - 25744898
Alignment:
| Q |
1 |
cttttttgcactctgatgcttgtggggtttccactcgaaatagattaaggagacaccctgtctaatttataaattagcaatgttgtttttatgtataaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
25745273 |
cttttttgcactctgatgcttgtggggtttccactcgaaatagattaaggagacaccctgtctaatttataaatttgcaatgttctttttatgtataaca |
25745174 |
T |
|
| Q |
101 |
gggtgagtttataatctgagtttatacatgaattaaactaatcaaattatagacattagatcatagcatctgaagatgatgtaggcgaaacagataaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25745173 |
gggtgagtttataatctgagtttatacatgaattaaactaatcaaattatagacattagatcatagcatctgaagatgatgtaggcgaaacagataaatt |
25745074 |
T |
|
| Q |
201 |
agattttctaattcaccaaaccccaacaaattaatatttttcaagcagaaatggaagagtaaacaggaagagagaaaagaggatgttgagttcacgatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25745073 |
agattttctaattcaccaaaccccaaca----aatatttttcaagcagaaatggaagagtaaaaaggaagagagaaaagaggatgttgagttcacgatca |
25744978 |
T |
|
| Q |
301 |
ttaggaggatctttcaaacccttaacgaggtcgttacttatggagatcaggtcattcacatcgaagtttctagaataatc |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25744977 |
ttaggaggatctttcaaacccttaacgaggtcgttacttatggagatcaggtcattcacatcgaagtttctagaataatc |
25744898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 278 - 380
Target Start/End: Complemental strand, 25738590 - 25738488
Alignment:
| Q |
278 |
agaggatgttgagttcacgatcattaggaggatctttcaaacccttaacgaggtcgttacttatggagatcaggtcattcacatcgaagtttctagaata |
377 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
25738590 |
agaggatgttgagttcacgatcattagcaggatctttcaaaaccttaacgaggtcgttgcttatggagatcagatcattcacgtcgaaatttctagaata |
25738491 |
T |
|
| Q |
378 |
atc |
380 |
Q |
| |
|
||| |
|
|
| T |
25738490 |
atc |
25738488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 380
Target Start/End: Original strand, 45304939 - 45305037
Alignment:
| Q |
282 |
gatgttgagttcacgatcattaggaggatctttcaaacccttaacgaggtcgttacttatggagatcaggtcattcacatcgaagtttctagaataatc |
380 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||| |||| ||| || ||||||||| |||||||| || || | || ||| ||||||||||||||| |||| |
|
|
| T |
45304939 |
gatgttgagatcacggtcattagcgggatcttgcaaaacctcaatgaggtcgttgcttatggaaataagctgatccacgtcgaagtttctagaagaatc |
45305037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University