View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_44 (Length: 361)
Name: NF2479_high_44
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_44 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 325
Target Start/End: Complemental strand, 29291165 - 29290850
Alignment:
| Q |
10 |
aagaatatttgaattgacttatttgaatttatatacaaaataaatatttgtgagattaattgtcaggccggttatagatcaaattggaagcaaaactagt |
109 |
Q |
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| T |
29291165 |
aagaatatttgaattgacttatttgaatttatatacaaaataaatatttgcgagattaattgtcaggccggttatagatcaaattggaagcaaaactagt |
29291066 |
T |
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| Q |
110 |
tcaagtggtaactatattcatcaaaatgctcgcctttatgaggaaaatggtgaagattctttgcatcnnnnnnnattcaatgtgcaggaagtgttgattg |
209 |
Q |
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| T |
29291065 |
tcaagtggtcactatattcatcgaaatgctcgcctttatgaggaaaatggtgaagattctttgcatctttttttattcaatgtgcaggaagtgttgattg |
29290966 |
T |
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| Q |
210 |
ttggagtttccaagaaatggcttggagtttcaaagaatcattttttcttcgctaccaatttttagtgtagaacgagcatctacttttgtgtttacaatgt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||| |||||||||||||| |
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| T |
29290965 |
ttggagtttccaagaaatggcttggagtttcaaagaatcattttttctgcgctaccaatttttagtgcagaacgagcacctacttctgtgtttacaatgt |
29290866 |
T |
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| Q |
310 |
ggagaatttggaagag |
325 |
Q |
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| T |
29290865 |
ggagaatttggaagag |
29290850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 325
Target Start/End: Complemental strand, 35236729 - 35236418
Alignment:
| Q |
10 |
aagaatatttgaattgacttatttgaatttatatacaaaataaatatttgtgagattaattgtcaggccggttatagatcaaattggaagcaaaactagt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35236729 |
aagaatatttgaattgacttatttgaatttatatacaata---atatttgcgagattaattgtcaggccggttatagatcaaattggaagcaaaactagt |
35236633 |
T |
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| Q |
110 |
tcaagtggtaactatattcatcaaaatgctcgcctttatgaggaaaatggtgaagattctttgcatcnnnnnnnattcaatgtgcaggaagtgttgattg |
209 |
Q |
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| T |
35236632 |
tcaagtggtcactatattcatcgaaatgctcgcctttatgaggaaaatggtgaagattctttgcatctttttttattcaatgtgcaggaagtgttgcttg |
35236533 |
T |
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| Q |
210 |
ttggagtttccaagaaatggcttggagtttcaaagaatcattttttcttcgctaccaatttttagtgtagaacgagcatctacttttgtgtttacaatgt |
309 |
Q |
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|||||||||| |||| | || ||||||||||||||||||||||||||| |||| ||||||||||||| |||| ||||||||||||||||||| | | ||| |
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| T |
35236532 |
ttggagtttcgaagatacgg-ttggagtttcaaagaatcattttttctgcgctgccaatttttagtgcagaatgagcatctacttttgtgttcatattgt |
35236434 |
T |
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| Q |
310 |
ggagaatttggaagag |
325 |
Q |
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| T |
35236433 |
ggagaatttggaagag |
35236418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 318 - 361
Target Start/End: Original strand, 33969436 - 33969479
Alignment:
| Q |
318 |
tggaagagattgatactgattgtgacggattcatttcttatgat |
361 |
Q |
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| T |
33969436 |
tggaagagattgatactgatggcgacggattcatttcttatgat |
33969479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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