View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_50 (Length: 352)
Name: NF2479_high_50
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 33367147 - 33367478
Alignment:
| Q |
1 |
agcttgaaactcaaattcaaatcaagacaggaaaaaagtggatttaattatctggtttttctaagggccctaccaatttaattccttcaatcattccctg |
100 |
Q |
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| T |
33367147 |
agcttgaaactcaaattcaaatcaagacaggaaaaaagtggatttaattatctggtttttctaagggccctaccaatttaattccttcaatcattccctg |
33367246 |
T |
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| Q |
101 |
gaggcatttaaatgtgaaattcaatttatgcaacaggatactcgtgattcgtgaacatgttttctaacccatgcagagttataaggtggattggaaaaga |
200 |
Q |
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| T |
33367247 |
gaggcatttaaatgtgaaattcaatttatgcaacaggatactcgtgattcgtgaacatgttttctaacccatgcagagttataaggtggattggaaaaga |
33367346 |
T |
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| Q |
201 |
aaattaacacttttgttctattattaagaatttaagagatatnnnnnnnnnnnnnnnnnnnntaatactcctacacaattttactgggagctcgaacttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||| |
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| T |
33367347 |
aaattaacacttttgttctattattaagaatttaagagatataaaaaaggaaaaacttaaaatagtactcctacacaattttactggg-gcttgaacttt |
33367445 |
T |
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| Q |
301 |
tgcaaaactcaaaactctcaccattttcggttt |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
33367446 |
tgcaaaactcaaaactctcaccattttcggttt |
33367478 |
T |
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