View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_53 (Length: 340)
Name: NF2479_high_53
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_53 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 29 - 300
Target Start/End: Complemental strand, 47589174 - 47588903
Alignment:
| Q |
29 |
gtatgatacttcctctaataaactccttcaagagttagtgtcattatccttccttagctgaacctgcaggttcacatgaaactgtaaattaatttgatca |
128 |
Q |
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| T |
47589174 |
gtatgatacttcctctgataaactccttcaagagttaatgtcattatccttccttagctgaacctgcaggttcacatgaaactgtaaattaatttgatca |
47589075 |
T |
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| Q |
129 |
agtacaacatagggaaggggtaaaatatacattactagcacaaatgttttagaaaatacgacttacgatgccatggtaaaatagttttacattgacgatn |
228 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47589074 |
agaacaacatagggaaggggtaaaatatacattactagcacaaatcttttagaaaatacgacttacgatgccatggtaaaatagttttgcattgacgata |
47588975 |
T |
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| Q |
229 |
nnnnnntatcaagtatgtagtagcaatgacaggttcaaaaaatttgatttatgggagcaagattatacacta |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47588974 |
aaaaaatatcaagtatgtggtagcaatgacaggttcaaaaaatttgatttatgggagcaagattatacacta |
47588903 |
T |
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