View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2479_high_61 (Length: 323)

Name: NF2479_high_61
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2479_high_61
NF2479_high_61
[»] chr7 (5 HSPs)
chr7 (11-229)||(34455309-34455527)
chr7 (138-265)||(4342355-4342482)
chr7 (168-265)||(42784842-42784939)
chr7 (168-265)||(48478986-48479083)
chr7 (91-261)||(3077639-3077808)
[»] chr8 (3 HSPs)
chr8 (138-264)||(25637444-25637569)
chr8 (25-258)||(34150076-34150309)
chr8 (146-261)||(5558875-5558989)
[»] chr6 (5 HSPs)
chr6 (138-261)||(29933630-29933753)
chr6 (43-244)||(5248805-5249006)
chr6 (72-260)||(33295146-33295333)
chr6 (134-261)||(8520560-8520687)
chr6 (230-265)||(28223719-28223754)
[»] chr4 (4 HSPs)
chr4 (138-261)||(4853616-4853739)
chr4 (168-265)||(5600627-5600724)
chr4 (186-265)||(6734430-6734509)
chr4 (138-204)||(28023206-28023272)
[»] chr2 (5 HSPs)
chr2 (138-261)||(2742402-2742525)
chr2 (93-229)||(31330851-31330988)
chr2 (93-229)||(31337572-31337709)
chr2 (134-261)||(2696066-2696192)
chr2 (138-256)||(31316011-31316129)
[»] chr1 (3 HSPs)
chr1 (163-265)||(44192976-44193078)
chr1 (138-212)||(14113686-14113760)
chr1 (221-261)||(14113757-14113797)
[»] chr3 (2 HSPs)
chr3 (138-260)||(18112454-18112576)
chr3 (146-261)||(17054248-17054362)
[»] chr5 (2 HSPs)
chr5 (134-261)||(37367950-37368076)
chr5 (146-261)||(41529497-41529611)
[»] scaffold0643 (1 HSPs)
scaffold0643 (146-261)||(7348-7462)
[»] scaffold0038 (1 HSPs)
scaffold0038 (230-265)||(24217-24252)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 34455309 - 34455527
Alignment:
Q  11 gaagcaaaggctg-ctgtaagtataagtgattcatagcttaagttgtggttaagttgccatgagttgttccaatagttgctataattgattattgagtgg 109  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34455309 gaagcaagggctgactgtaagtataagtgattcatagcttaagttgtggttaagttgccatgagttgttccaatagttgctataattgattattgagtgg 34455408  T
Q  110 aacaagttaaaatttcgatgtaagtggtttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcct 209  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||| || | |    
T  34455409 aacaa-tttaaatttcgatgtaagtggtctaggagatgtgtatatatgtttagtttgattctggaaaatttgaattgaaatggaattgtttagaggtcat 34455507  T
Q  210 aagttgtcagttaagctgtt 229  Q
    ||| ||||||||||||||||    
T  34455508 aagctgtcagttaagctgtt 34455527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 138 - 265
Target Start/End: Complemental strand, 4342482 - 4342355
Alignment:
Q  138 ttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaa 237  Q
    ||||||| |||||||| |||| | ||||| ||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||| || ||    
T  4342482 ttaggagctgtgtatacatgtatggtttgcttctggaaaatttgaacagaaattgaattgtttagagggtataagttgtcagttaagctgttttaagcaa 4342383  T
Q  238 aatgccttaaatgactaagttgtgaatt 265  Q
    ||||||||||||||||||||||||||||    
T  4342382 aatgccttaaatgactaagttgtgaatt 4342355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 168 - 265
Target Start/End: Original strand, 42784842 - 42784939
Alignment:
Q  168 ttctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaaaatgccttaaatgactaagttgtgaatt 265  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42784842 ttctggaaaatttgagcagaaattgaattgtttagagggcataaattgtcagttaagctgttttgagaaaaatgccttaaaagactaagttgtgaatt 42784939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 168 - 265
Target Start/End: Complemental strand, 48479083 - 48478986
Alignment:
Q  168 ttctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaaaatgccttaaatgactaagttgtgaatt 265  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48479083 ttctggaaaatttgagcagaaattgaattgtttagagggcataacttgtcagttaagctgttttgagaaaaatgccttaaaagactaagttgtgaatt 48478986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 91 - 261
Target Start/End: Original strand, 3077639 - 3077808
Alignment:
Q  91 ataattgattattgagtggaacaagttaaaatttcgatgtaagtggtttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaat 190  Q
    |||| |||||| || ||| ||||||| | ||||||| | |||||| || ||||  |||||| | |||||| ||||| |||||||||||||||||||||||    
T  3077639 ataagtgattaatgggtgaaacaagtaagaatttcggtataagtgatt-aggatttgtgtaaacatgtttggtttgcttctggaaaatttgaacagaaat 3077737  T
Q  191 tgaattgtttagggggcctaagttgtcagttaagctgttttgagaaaaatgccttaaatgactaagttgtg 261  Q
    ||||| |||||| |||  |||| ||| |||||||||||||| ||||||||||||||||||| |||||||||    
T  3077738 tgaatggtttagagggtataagctgttagttaagctgtttttagaaaaatgccttaaatgattaagttgtg 3077808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 25637444 - 25637569
Alignment:
Q  138 ttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaa 237  Q
    ||||||| ||| |||| |||| | ||||| ||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||| ||    
T  25637444 ttaggagctgtatatacatgtatggtttgcttctggaaaatttgaacagaaattgaattgtttagtgggtataagttgtcagttaagctgttttgag-aa 25637542  T
Q  238 aatgccttaaatgactaagttgtgaat 264  Q
    |||||||||||||||||||||||||||    
T  25637543 aatgccttaaatgactaagttgtgaat 25637569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 258
Target Start/End: Original strand, 34150076 - 34150309
Alignment:
Q  25 tgtaagtataagtgattcatagcttaagttgtggttaagttgccatgagttgttccaatagttgctataattgattattgagtggaacaagttaaaattt 124  Q
    ||||||||||||||||  ||||| ||||||||| |||| ||||||| ||||||||||| || | | | |||||||||||||||  |||| |||| ||| |    
T  34150076 tgtaagtataagtgataaatagcctaagttgtgattaatttgccataagttgttccaaaagctaccagaattgattattgagttaaacatgttagaatat 34150175  T
Q  125 cgatgtaagtggtttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaag 224  Q
    |  | |  ||| |||||||| ||| |||| ||||||  |||| ||||||||||||||||  ||||||||||| | ||| |  | |||| |||||||||||    
T  34150176 ctgtatgggtgatttaggagctgtttatacatgttttctttgtttctggaaaatttgaattgaaattgaattttctagagatcataagctgtcagttaag 34150275  T
Q  225 ctgttttgagaaaaatgccttaaatgactaagtt 258  Q
    || ||||| |||   || ||||||| ||||||||    
T  34150276 cttttttgcgaattttgacttaaattactaagtt 34150309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 261
Target Start/End: Complemental strand, 5558989 - 5558875
Alignment:
Q  146 tgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaaaatgcctt 245  Q
    |||||||| || |||  ||||||||||||||||| ||   ||||||||||||| ||| || | |||| ||||||| ||||||||||| |||   ||||||    
T  5558989 tgtgtatacatattttctttgattctggaaaattcgagttgaaattgaattgtctagaggtcataagctgtcagt-aagctgttttgggaattttgcctt 5558891  T
Q  246 aaatgactaagttgtg 261  Q
    ||||||||||||||||    
T  5558890 aaatgactaagttgtg 5558875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 138 - 261
Target Start/End: Original strand, 29933630 - 29933753
Alignment:
Q  138 ttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaa 237  Q
    ||||||||| |||||| ||||||  ||||||||||||||||| ||| |||||||||||||||||| |||| |||| ||||| ||||||||||||||| ||    
T  29933630 ttaggagatatgtatacatgttttctttgattctggaaaattagaatagaaattgaattgtttagagggcataagctgtcaattaagctgttttgagcaa 29933729  T
Q  238 aatgccttaaatgactaagttgtg 261  Q
    ||||||||||||||||||||||||    
T  29933730 aatgccttaaatgactaagttgtg 29933753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 244
Target Start/End: Original strand, 5248805 - 5249006
Alignment:
Q  43 atagcttaagttgtggttaagttgccatgagttgttccaatagttgctataattgattattgagtggaacaagttaaaatttcgatgtaagtggtttagg 142  Q
    ||||||||||||||| |||||||||||| ||||||||| | || | | ||| |||||||||||||  |||| |||| ||| ||  |  || ||||||||     
T  5248805 atagcttaagttgtgattaagttgccataagttgttcctaaagctaccatagttgattattgagttaaacatgttagaatctctgtacaattggtttaga 5248904  T
Q  143 agatgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaaaatgc 242  Q
    || |||||| | |||||| | ||| ||||||||| ||| || | |||||||||||||||| |||| |||| ||||||||||||   |||||| |||||||    
T  5248905 aggtgtgtaaacatgtttgggttgcttctggaaatttttaataaaaattgaattgtttagagggcataagctgtcagttaagcctgtttgagcaaaatgc 5249004  T
Q  243 ct 244  Q
    ||    
T  5249005 ct 5249006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 260
Target Start/End: Original strand, 33295146 - 33295333
Alignment:
Q  72 agttgttccaatagttgctataattgattattgagtggaacaagttaaaatttcgatgtaag--tggtttaggagatgtgtatatatgtttagtttgatt 169  Q
    ||||||||||| || | | ||| |||||||||||||  || | |||| ||||||  ||||||  |||| |||||| |||||||| || |||  |||||||    
T  33295146 agttgttccaaaagcttcaatatttgattattgagttaaatatgttagaatttc--tgtaagactggtgtaggagctgtgtatacatattttctttgatt 33295243  T
Q  170 ctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaaaatgccttaaatgactaagttgt 260  Q
    |||||||||||||   ||||||||||||| ||| || | |||| |||||| |||||||||||| |||   |||||||||| ||||||||||    
T  33295244 ctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taagctgttttgggaattttgccttaaataactaagttgt 33295333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 261
Target Start/End: Complemental strand, 8520687 - 8520560
Alignment:
Q  134 tggtttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttga 233  Q
    |||| |||||||||||| || || |||  ||||||||||||||||||||   |||||| |||||| ||| || | |||| |||||||||||||||||||     
T  8520687 tggtgtaggagatgtgtgtacatattttctttgattctggaaaatttgagttgaaatttaattgtctagaggtcataagctgtcagttaagctgttttgc 8520588  T
Q  234 gaaaaatgccttaaatgactaagttgtg 261  Q
     ||   ||||||||||||||| ||||||    
T  8520587 aaattttgccttaaatgactatgttgtg 8520560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 265
Target Start/End: Complemental strand, 28223754 - 28223719
Alignment:
Q  230 ttgagaaaaatgccttaaatgactaagttgtgaatt 265  Q
    ||||| ||||||||||||||||||||||||||||||    
T  28223754 ttgagcaaaatgccttaaatgactaagttgtgaatt 28223719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 138 - 261
Target Start/End: Complemental strand, 4853739 - 4853616
Alignment:
Q  138 ttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaa 237  Q
    ||||||||| |||||| ||||||  ||||||||||||||||| ||| |||||||||||||||||| |||| |||| |||||||||||||||||| || ||    
T  4853739 ttaggagatatgtatacatgttttctttgattctggaaaattagaatagaaattgaattgtttagagggcataagctgtcagttaagctgttttaagtaa 4853640  T
Q  238 aatgccttaaatgactaagttgtg 261  Q
    ||||||||||||||||||||||||    
T  4853639 aatgccttaaatgactaagttgtg 4853616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 168 - 265
Target Start/End: Complemental strand, 5600724 - 5600627
Alignment:
Q  168 ttctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaaaatgccttaaatgactaagttgtgaatt 265  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5600724 ttctggaaaatttgagcagaaattgaattgtttagagggcataacttgtcagttaagctgttttgagaaaaatgccttaaaagactaagttgtgaatt 5600627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 6734430 - 6734509
Alignment:
Q  186 gaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaaaatgccttaaatgactaagttgtgaatt 265  Q
    ||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  6734430 gaaattgaattgtttagaggtcataagttgtcagttaagctgttttgagcaaaatgccttaaatgacaaagttgtgaatt 6734509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 28023272 - 28023206
Alignment:
Q  138 ttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttaggg 204  Q
    ||||||||| |||||| ||||||  ||||||||||||||||| ||| ||||||||||||||||||||    
T  28023272 ttaggagatatgtatacatgttttctttgattctggaaaattagaatagaaattgaattgtttaggg 28023206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 138 - 261
Target Start/End: Original strand, 2742402 - 2742525
Alignment:
Q  138 ttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaa 237  Q
    ||||||||| |||||| ||||||  ||||||||||||||||| ||| |||||||||||||||||| |||| |||| ||||||||||| ||||||||| ||    
T  2742402 ttaggagatatgtatacatgttttctttgattctggaaaattagaatagaaattgaattgtttagagggcataagctgtcagttaagttgttttgagcaa 2742501  T
Q  238 aatgccttaaatgactaagttgtg 261  Q
    |||| |||||||||||||||||||    
T  2742502 aatgtcttaaatgactaagttgtg 2742525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 229
Target Start/End: Original strand, 31330851 - 31330988
Alignment:
Q  93 aattgattattgagtggaa-caagttaaaatttcgatgtaagtggtttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaatt 191  Q
    |||||||||||||||  || ||||||| |||||| || ||||||  |||||||||||||| | ||||||  |||||||||||||||||||||  |||||     
T  31330851 aattgattattgagttaaaacaagttagaatttcaatataagtgtcttaggagatgtgtaaacatgtttgctttgattctggaaaatttgaattgaaatg 31330950  T
Q  192 gaattgtttagggggcctaagttgtcagttaagctgtt 229  Q
    ||||||||||  || | |||| ||||||||||||||||    
T  31330951 gaattgtttaaaggtcataagctgtcagttaagctgtt 31330988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 229
Target Start/End: Original strand, 31337572 - 31337709
Alignment:
Q  93 aattgattattgagtggaa-caagttaaaatttcgatgtaagtggtttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaatt 191  Q
    |||||||||||||||  || ||||||| |||||| || ||||||  |||||||||||||| | ||||||  |||||||||||||||||||||  |||||     
T  31337572 aattgattattgagttaaaacaagttagaatttcaatataagtgtcttaggagatgtgtaaacatgtttgctttgattctggaaaatttgaattgaaatg 31337671  T
Q  192 gaattgtttagggggcctaagttgtcagttaagctgtt 229  Q
    ||||||||||  || | |||| ||||||||||||||||    
T  31337672 gaattgtttaaaggtcataagctgtcagttaagctgtt 31337709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 261
Target Start/End: Original strand, 2696066 - 2696192
Alignment:
Q  134 tggtttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttga 233  Q
    |||| |||||| |||||||| || |||  ||||||||||||||||||||   ||||||||||||| ||| || | |||| |||||| ||||||||||||     
T  2696066 tggtgtaggagctgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taagctgttttgg 2696164  T
Q  234 gaaaaatgccttaaatgactaagttgtg 261  Q
    |||   ||||||||||||||||||||||    
T  2696165 gaattttgccttaaatgactaagttgtg 2696192  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 138 - 256
Target Start/End: Complemental strand, 31316129 - 31316011
Alignment:
Q  138 ttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaa 237  Q
    ||||||| |||||||| ||||||  |||||||||||||||||||||  ||||| ||||||||||| || | |||  |||||||||||||||| || |||     
T  31316129 ttaggagctgtgtatacatgttttatttgattctggaaaatttgaattgaaatggaattgtttagaggtcataaactgtcagttaagctgttatgggaat 31316030  T
Q  238 aatgccttaaatgactaag 256  Q
      || ||||||||||||||    
T  31316029 tttgtcttaaatgactaag 31316011  T

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Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 44192976 - 44193078
Alignment:
Q  163 tttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaaaatgccttaaatgactaagttgtga 262  Q
    ||||| |||||||||||||||  ||||||||| ||||||| || | |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44192976 tttgactctggaaaatttgaattgaaattgaactgtttagaggtcataagttgttagttaagctgttttgagaaaaatgccttaaatgactaagttgtga 44193075  T
Q  263 att 265  Q
    |||    
T  44193076 att 44193078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 14113686 - 14113760
Alignment:
Q  138 ttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaag 212  Q
    ||||||||| |||||| ||||||  ||||||||||||||||||||| |||||||||||||||||| |||| ||||    
T  14113686 ttaggagatatgtatacatgtttgctttgattctggaaaatttgaatagaaattgaattgtttagagggcataag 14113760  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 14113757 - 14113797
Alignment:
Q  221 taagctgttttgagaaaaatgccttaaatgactaagttgtg 261  Q
    ||||||||||| || ||||||| ||||||||||||||||||    
T  14113757 taagctgttttaagtaaaatgctttaaatgactaagttgtg 14113797  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 260
Target Start/End: Complemental strand, 18112576 - 18112454
Alignment:
Q  138 ttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaa 237  Q
    ||||||| |||||||| ||||||  |||||||||||||||||||||  ||||| ||||||||||| || | |||| |||||||||||||||| || |||     
T  18112576 ttaggagctgtgtatacatgttttatttgattctggaaaatttgaattgaaatggaattgtttagaggtcataagctgtcagttaagctgttatgggaat 18112477  T
Q  238 aatgccttaaatgactaagttgt 260  Q
      || ||||||||||||||||||    
T  18112476 tttgtcttaaatgactaagttgt 18112454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 17054248 - 17054362
Alignment:
Q  146 tgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaaaatgcctt 245  Q
    |||||||| || |||  ||||||||||||||||||||   ||||||||||||| ||| || | |||| |||||| |||||||||||| |||   ||||||    
T  17054248 tgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taagctgttttgggaattttgcctt 17054346  T
Q  246 aaatgactaagttgtg 261  Q
    ||||||||||||||||    
T  17054347 aaatgactaagttgtg 17054362  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 261
Target Start/End: Original strand, 37367950 - 37368076
Alignment:
Q  134 tggtttaggagatgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttga 233  Q
    |||| |||||| |||||||| || |||  ||||||||||||||||||||   ||||||||||||| ||| || | |||| |||||| ||||||||||||     
T  37367950 tggtgtaggagctgtgtatacatattttatttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taagctgttttgg 37368048  T
Q  234 gaaaaatgccttaaatgactaagttgtg 261  Q
    |||   ||||||||||||||||||||||    
T  37368049 gaattttgccttaaatgactaagttgtg 37368076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 261
Target Start/End: Complemental strand, 41529611 - 41529497
Alignment:
Q  146 tgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaaaatgcctt 245  Q
    |||||||| || |||  ||||||||||||||||||||   ||||||||||||| ||| || | |||| |||||| |||||||||||| |||   ||||||    
T  41529611 tgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgtcag-taagctgttttgggaattttgcctt 41529513  T
Q  246 aaatgactaagttgtg 261  Q
    ||||||||||||||||    
T  41529512 aaatgactaagttgtg 41529497  T

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Target: scaffold0643 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 7348 - 7462
Alignment:
Q  146 tgtgtatatatgtttagtttgattctggaaaatttgaacagaaattgaattgtttagggggcctaagttgtcagttaagctgttttgagaaaaatgcctt 245  Q
    |||||||| || |||  ||||||||||||||||||||   ||||||||||||| ||| || | |||| ||| || |||||||||||| |||   ||||||    
T  7348 tgtgtatacatattttctttgattctggaaaatttgagttgaaattgaattgtctagaggtcataagctgttag-taagctgttttgggaattttgcctt 7446  T
Q  246 aaatgactaagttgtg 261  Q
    ||||||||||||||||    
T  7447 aaatgactaagttgtg 7462  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 265
Target Start/End: Complemental strand, 24252 - 24217
Alignment:
Q  230 ttgagaaaaatgccttaaatgactaagttgtgaatt 265  Q
    ||||| ||||||||||||||||||||||||||||||    
T  24252 ttgagcaaaatgccttaaatgactaagttgtgaatt 24217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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