View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_70 (Length: 310)
Name: NF2479_high_70
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_70 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 21272286 - 21271984
Alignment:
| Q |
15 |
caaaggcaatttagattgaaaacaaaaccacttaatatcactgccgataggattaagtgccttttggaatttttcaaggtatcatgtgctgatcaattta |
114 |
Q |
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| T |
21272286 |
caaaggcaatttagattgaaaacaaaaccacttaatatcactgccgataggattaagtgccttttggaatttttcaaggtatcatgtgctgatcaattta |
21272187 |
T |
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| Q |
115 |
aatatggcaaatatgaattcaaaattaaagcaccacgtg-----ataaacacttgaataatattggactcataaaacctggatttcgaggtatctggcgt |
209 |
Q |
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| T |
21272186 |
aatatggcaaatatgaattcaaaattaaagcaccacgtgcatcgacaaacacttgaataatattggactcataaaacctggatttcgaggtatctggcgt |
21272087 |
T |
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| Q |
210 |
catcttcataggatcaatatttctgaacaaggccgcctaatcaagcgtat--tcacgtaacatgggattttggcacctggattattctcgtaattaaaga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21272086 |
catcttcataggatcaatatttctgaacaaggccgcctaatcaagcgtattctcacgtaacatgggattttggcacctggattattctcgtaattaaaga |
21271987 |
T |
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| Q |
308 |
aca |
310 |
Q |
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||| |
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| T |
21271986 |
aca |
21271984 |
T |
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