View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_73 (Length: 298)
Name: NF2479_high_73
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_73 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 10034358 - 10034634
Alignment:
| Q |
1 |
cctttcactagtgctttcatttgtttgtaaccatgagctcaaatgactcacctgacatagcagaaaccttgaaacaaatcctacgaaatccacagtcctg |
100 |
Q |
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| T |
10034358 |
cctttcactggtgctttcatttgtttgtaaccatgagctcaaatgactcacctgacatagcagaaaccttgaaacaaatcctacgaaatcaacagtcctg |
10034457 |
T |
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| Q |
101 |
tcaaaatgatatcagtaacctatcatcataaatgagcaatctacgaactcgttttccacctcttggatttactaattcatcctatgcaaacacatccaac |
200 |
Q |
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|||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
10034458 |
ccaaaatcatatcaataacctatcatcagaaatgagcaatctacgaactcgttttccacctcctggatttac---ttcatcctatgcaaacacatccaac |
10034554 |
T |
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| Q |
201 |
ccccatgctttttctgctgccaccattaaacttgatataccttgcttcaatggtactgatgccttaggttatatctttaa |
280 |
Q |
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| T |
10034555 |
ccccatgcttttactgctgccgccattaaacttgatataccccgtttcaatggtactgatgccttaggttggatctttaa |
10034634 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 39606874 - 39607081
Alignment:
| Q |
1 |
cctttcactagtgctttcatttgtttgtaaccatgagctcaaatgactcacctgacatagcagaaaccttgaaacaaatcctacgaaatccacagtcctg |
100 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||| | |||||||| |||||| |||||| |||||||||| | | | || ||| |
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| T |
39606874 |
cctttcactggtgctttcatttgtttgctaccatgagctcaaacaaatcacctgatgtagcagcaaccttacaacaaatcctttgttaccagcaaaactg |
39606973 |
T |
|
| Q |
101 |
tcaaaatgatatcagtaacctatcatcataaatgagcaatctacgaactcgttttccacctcttggatttactaattcatcctatgcaaacacatccaac |
200 |
Q |
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| T |
39606974 |
ttagaatgatataagtaatctttccttagaaatgagcaatttacgaactcgatttccacctcctgggtt--ctca-tcctcttatgctaacacatccaac |
39607070 |
T |
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| Q |
201 |
ccccatgcttt |
211 |
Q |
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||| ||||||| |
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| T |
39607071 |
ccctatgcttt |
39607081 |
T |
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