View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_88 (Length: 274)
Name: NF2479_high_88
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_88 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 51735115 - 51735347
Alignment:
| Q |
18 |
taaataagaaatataattttgaatgtgaagtcttctaannnnnnng-accaagtaggtatacaaaagttggtaatcactatctatttctgttatatagtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51735115 |
taaataagaaatataattttgaatgtgaagtcttctaatttttttttaccaagtaggaatacaaaagttggtaatcactatctatttctgttatatagtt |
51735214 |
T |
|
| Q |
117 |
gagcagacgtaaaccgagtctactatgctgtttggaattctcctgtctttgtaattgatattttttgaaaaatgaagaaatataatacacatcagatgta |
216 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51735215 |
gagcagacgtaaaccgagtctaccatgctgtttggaattctcctgtctttgtaattgatatttttcgaaaaatgaagaaatataatacacatcagatgta |
51735314 |
T |
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| Q |
217 |
tccttttcgtttgagctacaatatctgcttcca |
249 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
51735315 |
tccttttcgtttgagctacaatatctgcttcca |
51735347 |
T |
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