View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_9 (Length: 556)
Name: NF2479_high_9
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 60 - 327
Target Start/End: Complemental strand, 4419645 - 4419378
Alignment:
| Q |
60 |
ttattaccatcatcatgtgatgacttataaaacttgtttagagatggtagcaatctaagataacgagtaaggatgaaggagaaattaataataattttat |
159 |
Q |
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| T |
4419645 |
ttattatcatcatcatgtgatgacttataaaacttttttagagatggtagcaatctaagataacgagtaaggatgaaggagaaattaataataattttat |
4419546 |
T |
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| Q |
160 |
gagatgtgtaaggagaaatttctgaaggtttttctttgacaaaatattgatgaggttagtgtaaggaatatatattgcatgtatttgtatttgtacattg |
259 |
Q |
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| T |
4419545 |
gagatgtgtaaggagaaatttctgaaggtttttctttgacaaaatattgatgaggttagtgtaaggaatatatattgcatgtatttgtatttgtacattg |
4419446 |
T |
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| Q |
260 |
tattggaatatttcgaaaacatgcataattatattggatcactacaaagagatacaataatcacacaa |
327 |
Q |
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| T |
4419445 |
tattggaatatttcgaaaacatgcataattatattggatcactacaaagagatacaataatcacacaa |
4419378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 398 - 545
Target Start/End: Complemental strand, 4419298 - 4419150
Alignment:
| Q |
398 |
ggaatatagctcaaatcttcttaaaagtgccatggtagtgattcgtgaattccnnnnnnnnnn-gtgggatactagttgtaaaaataagatgatgttttt |
496 |
Q |
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| T |
4419298 |
ggaatatagctcaaatcttcttaaaagtgccatggtagtgattcgtgaattcctttttttttttgtgggatactagttataaaaataagatgatgttttt |
4419199 |
T |
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| Q |
497 |
ggcatatatggccagggatgacccaaaagaaaaggtcactaaggttctt |
545 |
Q |
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| T |
4419198 |
ggcatatatggccagggatgacccaaaagaaaaggtcactaaggttctt |
4419150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 4419707 - 4419661
Alignment:
| Q |
19 |
atataccgttgcatacggttacaaatgctagctcttaattattatta |
65 |
Q |
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| T |
4419707 |
atatactgttgcatacggttacaaatgctagctcttaattattatta |
4419661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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