View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_high_96 (Length: 259)
Name: NF2479_high_96
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_high_96 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 33051168 - 33050924
Alignment:
| Q |
15 |
aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcccataaaatacatttcaaagtaaca |
114 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33051168 |
aatattgggtatgagaaaattatcagcattgaaacatgagagtggtgcatgactatctctatgactcatcacagcccataaaatacatttcaaagtaaca |
33051069 |
T |
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| Q |
115 |
tgtaattgagaaaaaatctgagaaaaaactataggacaatgcaacattgatacaccgtacataacacacaagtttgaaccaacaatgataaatttgaaac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33051068 |
tgtaattgagaaaaaatctgagaaaaaactataggacaatgcaacattgatacaccgtacataacacacaagtttgaaccaacaatgataaatttgaaac |
33050969 |
T |
|
| Q |
215 |
ataaagacactaaattaaatccaacttggatatacctaagaaaca |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33050968 |
ataaagacactaaattaaatccaacttggatatacctaagaaaca |
33050924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 33032926 - 33032816
Alignment:
| Q |
15 |
aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcccataaaatac--atttcaaagtaa |
112 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| | |||| ||||| |
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| T |
33032926 |
aataatgggtatgagaaaattatcagcacggaaacatcagagtggtgcatgactatctctatgactcatcatagccaataaaatacaaaattcagagtaa |
33032827 |
T |
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| Q |
113 |
catgtaattga |
123 |
Q |
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|||||||||| |
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| T |
33032826 |
tatgtaattga |
33032816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 8264119 - 8264038
Alignment:
| Q |
15 |
aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcccataaa |
96 |
Q |
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|||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
8264119 |
aataatgggtatgagaaaattatcagcactggaatatcagagtggtgcatgactatctctatgattcatcatagcccataaa |
8264038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 8277537 - 8277456
Alignment:
| Q |
15 |
aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcccataaa |
96 |
Q |
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|||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
8277537 |
aataatgggtatgagaaaattatcagcactggaatatcagagtggtgcatgactatctctatgattcatcatagcccataaa |
8277456 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 9901039 - 9901098
Alignment:
| Q |
15 |
aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctcta |
75 |
Q |
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|||| ||||||||||||||||||||||| | || |||||||||||||||||||||||||| |
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| T |
9901039 |
aataatgggtatgagaaaattatcagcacaggaa-atcagagtggtgcatgactatctcta |
9901098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 7975245 - 7975171
Alignment:
| Q |
15 |
aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcc |
90 |
Q |
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|||| ||||||| ||||| ||||||||| | || |||| |||||||||||||||||||||||| |||||| |||| |
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| T |
7975245 |
aataatgggtataagaaagttatcagcacaggaa-atcaaagtggtgcatgactatctctatgattcatcatagcc |
7975171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 13838165 - 13838239
Alignment:
| Q |
15 |
aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcc |
90 |
Q |
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|||| ||||||| ||||| ||||||||| | || |||| |||||||||||||||||||||||| |||||| |||| |
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| T |
13838165 |
aataatgggtataagaaagttatcagcacaggaa-atcaaagtggtgcatgactatctctatgattcatcatagcc |
13838239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 1293818 - 1293892
Alignment:
| Q |
15 |
aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcc |
90 |
Q |
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|||| ||||||| ||||| ||||||||| | || |||| |||||||||||||||||||||||| |||||| |||| |
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| T |
1293818 |
aataatgggtataagaaagttatcagcacaggaa-atcaaagtggtgcatgactatctctatgattcatcatagcc |
1293892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 26543722 - 26543796
Alignment:
| Q |
15 |
aatattgggtatgagaaaattatcagcattgaaacatcagagtggtgcatgactatctctatgactcatcacagcc |
90 |
Q |
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|||| ||||||| ||||| ||||||||| | || |||| |||||||||||||||||||||||| |||||| |||| |
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| T |
26543722 |
aataatgggtataagaaagttatcagcacaggaa-atcaaagtggtgcatgactatctctatgattcatcatagcc |
26543796 |
T |
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