View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_10 (Length: 535)
Name: NF2479_low_10
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Complemental strand, 41591648 - 41591142
Alignment:
| Q |
18 |
aacacattccttaaaaactattacttagtattaatggttaggcatttcatattaataagatccaacttaaaattttcatttaaacaaaaaataagtcagt |
117 |
Q |
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| T |
41591648 |
aacacattccttaaaaactattacttagtattaatggttaggcatttcatattaataagatccaacttaaaattttcatttaaacaaaaaataagtcagt |
41591549 |
T |
|
| Q |
118 |
caaagtttactttaaacctcactcactcttaggatagtcctagtctgctttatcataatatataaaggctccctgtacataagagctatggagtaattta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41591548 |
caaagtttactttaaacctcactcactcttaggatagtcctagtctgctttatcataatatataaaggctccctatacataagagctatggagtaattta |
41591449 |
T |
|
| Q |
218 |
tcttgcttgatatacaatatctgcatagatcagctgtgcatagagctatttactgtcaaaaagaaatatagaggagtctgacttaaggctcaactctaag |
317 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41591448 |
tcttgcttgatgtacaatatctgcatagatcagctgtgcatagagctatttactgtcaaaaagaaatatagaggagtctgacttaaggctcaactctaag |
41591349 |
T |
|
| Q |
318 |
aatgaattatttgtccnnnnnnntcatcaaaatttgtagatcatactccatgctgctttccaacatcaaagatcaactaaacaacccaagcannnnnnnn |
417 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41591348 |
aatgaattatttgtccaaaaaaatcatcaaaatttgtagatcatactccatgctgctttccaacatcaaagatcaactaaacaacccaagca-ttttttt |
41591250 |
T |
|
| Q |
418 |
nncatttggaagaaacacaaacatgagagtaaatttaccnnnnnnncccttcaaatcaatatacctctgaaacattttggtacacaaatttaccaaatga |
517 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41591249 |
ttcatttggaagaaacacaaacatgagagtaaattcacctttttttcccttcaaatcaatatacctctgaaacattttggtacacaagtttaccaaatga |
41591150 |
T |
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| Q |
518 |
ggcctttg |
525 |
Q |
| |
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|||||||| |
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| T |
41591149 |
ggcctttg |
41591142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 46 - 247
Target Start/End: Complemental strand, 41585036 - 41584832
Alignment:
| Q |
46 |
tattaatggttaggcatttcatattaataagatccaacttaaaattttcatttaaacaaaaaa--taagtcagtcaaagtttactttaaacctcactcac |
143 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
41585036 |
tattaatgattaggcatttcatattaataagatccagcttaaatttttaatttaaacaaaaaaaataagtcactcaaagtttactttaaacctcactcac |
41584937 |
T |
|
| Q |
144 |
tcttaggatagtcctagtctgctttatcataatatataaaggctccctgtacataagagctatggagtaatttatcttgcttgatatacaatatc-tgca |
242 |
Q |
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| T |
41584936 |
tcttaggatagtcctagactacgttaccaaaatatataaaggcctcgtatacataagagctatggagtagttgatcttgcttggtgtataatatcatgca |
41584837 |
T |
|
| Q |
243 |
tagat |
247 |
Q |
| |
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||||| |
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| T |
41584836 |
tagat |
41584832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 271 - 409
Target Start/End: Complemental strand, 41574945 - 41574804
Alignment:
| Q |
271 |
tgtcaaaaagaaatatagaggagtctgacttaa----ggctcaactctaagaatgaattatttgtccnnnnnnntcatcaaaatttgtagatcatactcc |
366 |
Q |
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||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
41574945 |
tgtcaaaaagaaatatagaggagtctgacttaattaaggctgaagtctaagaatgaattatttgtcaaaaaaaa-catcaaaatttgtggatcatactcc |
41574847 |
T |
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| Q |
367 |
atgctgctttccaacatcaaagatcaactaaacaacccaagca |
409 |
Q |
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| T |
41574846 |
atgctgctttccaacaccaaagatcaactaaacaacccaagca |
41574804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 271 - 394
Target Start/End: Complemental strand, 41584759 - 41584633
Alignment:
| Q |
271 |
tgtcaaaaagaaatatagaggagtctgacttaaggctcaactctaagaatgaattatttgtc---cnnnnnnntcatcaaaatttgtagatcatactcca |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||| ||||| |
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| T |
41584759 |
tgtcaaaaagaaatatagaggagtctgacttaaggctcaagtctaagaatgaattatttgtcaaaaaaaaaaatcatcaaaatttgtggatcatgctcca |
41584660 |
T |
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| Q |
368 |
tgctgctttccaacatcaaagatcaac |
394 |
Q |
| |
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||||||||||||| | |||||| |||| |
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| T |
41584659 |
tgctgctttccaaaaccaaagaacaac |
41584633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 41575142 - 41575018
Alignment:
| Q |
124 |
ttactttaaacctcactcactcttaggatagtcctagtctgctttatcataatatataaaggctccctgtacataagagctatggagtaatttatcttgc |
223 |
Q |
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||||||||||||||||||||||||||||||||||||| || | ||| || ||||||||||||| | | |||||||||||||||||||| || ||||||| |
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| T |
41575142 |
ttactttaaacctcactcactcttaggatagtcctagactacattaccaaaatatataaaggcctcgtatacataagagctatggagtagttgatcttgc |
41575043 |
T |
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| Q |
224 |
ttgatatacaatatc-tgcatagat |
247 |
Q |
| |
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||| | || |||||| ||||||||| |
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| T |
41575042 |
ttggtgtagaatatcatgcatagat |
41575018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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