View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2479_low_101 (Length: 259)
Name: NF2479_low_101
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_101 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 171
Target Start/End: Complemental strand, 3666340 - 3666172
Alignment:
| Q |
3 |
tttgaggctatgtagaataattctagatctttgatagttaacttgagagtcaccacagcacaaaaagcaagcaatattcccaaaaagatcttcactttca |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3666340 |
tttgaggctatgtagaataattctagatctttgatagttaacttgagagtcaccacagcacaaaaagcaagcaatattcccaaaaagatcttcactttca |
3666241 |
T |
|
| Q |
103 |
ttgacctattcctcaaccagctagaccatacattcacgggagaatccttctttgatcccattttgtgac |
171 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3666240 |
ttgacctattcctcaaccagctagacaatacattcacgggagaatccttctttgatcccattttgtgac |
3666172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 3675781 - 3675638
Alignment:
| Q |
28 |
gatctttgatagttaacttgagagtcaccacagcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgacctattcctcaaccagctaga |
127 |
Q |
| |
|
||||| |||| || ||||| |||| ||||| |||| |||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||| |
|
|
| T |
3675781 |
gatctctgatggtaaactttagagccaccaaagcagaaaatgcaagcaatattcccaaaaagattttcactttcattgatctcttcctcaaccatataga |
3675682 |
T |
|
| Q |
128 |
ccatacattcacgggagaatccttctttgatcccattttgtgac |
171 |
Q |
| |
|
| | |||||||| || |||||| ||||||||||||||||||||| |
|
|
| T |
3675681 |
caaaacattcacaggggaatccctctttgatcccattttgtgac |
3675638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 3683194 - 3683078
Alignment:
| Q |
52 |
tcaccacagcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgacctattcctcaaccagctagaccatacattcacgggagaatcctt |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| | | | | |||||||| | | ||||| | |
|
|
| T |
3683194 |
tcaccacagcacaaaaagcaagcaatattcccaacaagatcttcactttcattgacctcttactcaaccatccaatcaaaacattcactgcaaaatccct |
3683095 |
T |
|
| Q |
152 |
ctttgatcccattttgt |
168 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3683094 |
ctttgatcccattttgt |
3683078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 3661384 - 3661277
Alignment:
| Q |
59 |
agcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgacctattcctcaaccagctagaccatacattcacgggagaatccttctttgat |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| | | || |||||||| || |||||| |||||||| |
|
|
| T |
3661384 |
agcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgatcttttcctcagccatccaaacataacattcaccggtgaatccctctttgat |
3661285 |
T |
|
| Q |
159 |
cccatttt |
166 |
Q |
| |
|
|||||||| |
|
|
| T |
3661284 |
cccatttt |
3661277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 3666138 - 3666100
Alignment:
| Q |
205 |
tatgggtattattttctgaaacagcaatgaaataatatt |
243 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3666138 |
tatgggtattattttctgaaacagaaatgaaataatatt |
3666100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University