View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_102 (Length: 256)
Name: NF2479_low_102
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_102 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 54687760 - 54688003
Alignment:
| Q |
13 |
aatattagtatataaccatcaggtttaagagggaagatattgcaacagaaaattgtgaacaagtttcgactttattattgctatatatttacacatataa |
112 |
Q |
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| T |
54687760 |
aatattagtaaataaccatcaggtttaagagggaagatattgcaacagaaaattgtgaacaagtttcgactttattattgctatatatttacacatataa |
54687859 |
T |
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| Q |
113 |
tttccatgtacaagtgtatctatgttgctacaaaattttgatccccataaacttccatttaatggttgagaatattaagaagtgaaactctaattttaat |
212 |
Q |
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| T |
54687860 |
tttccatgtacaagtgtatctatgttgctacaaaattttgatccccataaacttccatttaatggttgagaatattaagaagtgaaactctaattttaat |
54687959 |
T |
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| Q |
213 |
gagacgcctgaatagaaactcaagcccttcttcaaggtcttgaa |
256 |
Q |
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| T |
54687960 |
gagacgcctgaatagaaactcaagcccttcttcaaggtcttgaa |
54688003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 84 - 256
Target Start/End: Original strand, 54692412 - 54692585
Alignment:
| Q |
84 |
ttattattgctatatatttacacatataatttccatgtacaagtgtatctatgttgctacaaaattttgatccccataaacttccatttaatggttgaga |
183 |
Q |
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| T |
54692412 |
ttattattactctacatttacacctataatttccatgtacaagtgtatctatattactacaaaattttgatcaccataaatattcatctaatggttgaga |
54692511 |
T |
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| Q |
184 |
atattaagaagtgaaactctaattttaatgagacgcct-gaatagaaactcaagcccttcttcaaggtcttgaa |
256 |
Q |
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| T |
54692512 |
ctattaagaattgaaactctgattttaatgagacgcctaaaacagaaactcaagcccttcttcgaagtcttgaa |
54692585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 105 - 256
Target Start/End: Original strand, 54699798 - 54699948
Alignment:
| Q |
105 |
acatataatttccatgtacaagtgtatctatgttgctacaaaattttgatccccataaacttccatttaatggttgagaatattaagaagtgaaactcta |
204 |
Q |
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| T |
54699798 |
acatataatttccatgtacaagtgtatctatatatctacaaaattttc-tccaaataaaagttcaactaatggttgaggatattaagaagtgagactcta |
54699896 |
T |
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| Q |
205 |
attttaatgagacgcctgaatagaaactcaagcccttcttcaaggtcttgaa |
256 |
Q |
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| T |
54699897 |
attttaatgagacgcctaaacaaaaactcaagcccttcttcaatgtcttgaa |
54699948 |
T |
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