View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_103 (Length: 255)
Name: NF2479_low_103
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_103 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 6 - 175
Target Start/End: Complemental strand, 32532996 - 32532827
Alignment:
| Q |
6 |
gtgagatgaagtaattaactcatcatatgttatgggtaacttttgttttctatcaatatacactccaaattttttattgttaatattattatcttcagat |
105 |
Q |
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| T |
32532996 |
gtgacatgaagtaattaactcatcatatgttatgggtaacttttgttttctatcaatatacactccaaattttttattgttaatattattatcttcagat |
32532897 |
T |
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| Q |
106 |
tataattattgtattatgagtcagattataatgaccaaaatctaaccaaaaacaaataaagattacaatt |
175 |
Q |
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| T |
32532896 |
tataattattgtattatgagtcagattataatgaccaaaatctaaccaaaaacaaataaagattacaatt |
32532827 |
T |
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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 32532833 - 32532783
Alignment:
| Q |
205 |
tacaattgtacaaaagaatcttaaataaatgaaagagattttacaaagatc |
255 |
Q |
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| T |
32532833 |
tacaattgtacaaaagaatcttaaataaatgaaagagattttacaaagatc |
32532783 |
T |
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