View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_106 (Length: 253)
Name: NF2479_low_106
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_106 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 337910 - 337978
Alignment:
| Q |
8 |
cgaagaatatacactaagaatcaagttttaatagttctgcaattatccacttttaacttagaaatgaat |
76 |
Q |
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| T |
337910 |
cgaagaatgtacactaagaatcaagttttaatagttctgcaattatccacttttaacttagaaatgaat |
337978 |
T |
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Target: scaffold0002; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 338092 - 338142
Alignment:
| Q |
203 |
gtaaagcctggatctctgtagtttcttttgtaaatcatagctactgctaca |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
338092 |
gtaaagcctggatctctgtagtttcttttgtaaatcatagctactgctaca |
338142 |
T |
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