View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_11 (Length: 534)
Name: NF2479_low_11
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 50804574 - 50804057
Alignment:
| Q |
1 |
atgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgtgcttcgtataaatgtgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804574 |
atgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgtgcttcgtataaatgtgt |
50804475 |
T |
|
| Q |
101 |
tgttaactagaaccatcaannnnnnnctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatctacatctttttgtttgctt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804474 |
tgttaactagaaccatcaatttttttctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatctacatctttttgtttgctt |
50804375 |
T |
|
| Q |
201 |
tgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggagtggaggttcagctgcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804374 |
tgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggagtggaggttcagctgcaa |
50804275 |
T |
|
| Q |
301 |
ctgaaagggttgttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagctgcttcacttgctag |
400 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
50804274 |
ctgaaagggtggttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagccgcttcacttgctag |
50804175 |
T |
|
| Q |
401 |
agtgtttcagagatgtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagcttt |
500 |
Q |
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| T |
50804174 |
agtgtttcagagatgtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagcttt |
50804075 |
T |
|
| Q |
501 |
gctgcagagggatgtttc |
518 |
Q |
| |
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|||||||||||||||||| |
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| T |
50804074 |
gctgcagagggatgtttc |
50804057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 50871303 - 50871820
Alignment:
| Q |
1 |
atgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgtgcttcgtataaatgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871303 |
atgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgtgcttcgtataaatgtgt |
50871402 |
T |
|
| Q |
101 |
tgttaactagaaccatcaannnnnnnctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatctacatctttttgtttgctt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50871403 |
tgttaactagaaccatcaatttttttctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatctacatctttttgtttgctt |
50871502 |
T |
|
| Q |
201 |
tgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggagtggaggttcagctgcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871503 |
tgtttggattgataggagatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggagtggaggttcagctgcaa |
50871602 |
T |
|
| Q |
301 |
ctgaaagggttgttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagctgcttcacttgctag |
400 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
50871603 |
ctgaaagggtggttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagccgcttcacttgctag |
50871702 |
T |
|
| Q |
401 |
agtgtttcagagatgtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagcttt |
500 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871703 |
agtgtttcagagatgtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagcttt |
50871802 |
T |
|
| Q |
501 |
gctgcagagggatgtttc |
518 |
Q |
| |
|
|||||||||||||||||| |
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| T |
50871803 |
gctgcagagggatgtttc |
50871820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 19057611 - 19058025
Alignment:
| Q |
1 |
atgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgtgcttcgtataaatgtgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
19057611 |
atgttccattagtgcagtattaagacttaactaacttattgcttaattagacaattcctaatttgcagtgataaactttttgtgcttcttataaatgtgt |
19057710 |
T |
|
| Q |
101 |
tgttaactagaaccatcaannnnnnnctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatctacatctttttgtttgctt |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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|
| T |
19057711 |
tgttaactagaaccatcaatttttttctttgttcaggactgttgagtcgggttgaataacatacttttatatcattgtatttacatctttttgtttgctt |
19057810 |
T |
|
| Q |
201 |
tgtttggattgatagga--gatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggagtggaggttcagctgc |
298 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057811 |
tgtttggattgataggaatgatgcgttgtggaacaccgatgggtaaggagaatgcagttgcagcattgctcgagttatgccggagtggaggttcagctgc |
19057910 |
T |
|
| Q |
299 |
aactgaaagggttgttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagctgcttcacttgct |
398 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
19057911 |
aactgaaagggtggttaaggcaccagctattgccggattacttcaaaccctactatttaccgggacaaagtgagctagacgtaaagccgcttcacttgct |
19058010 |
T |
|
| Q |
399 |
agagtgtttcagaga |
413 |
Q |
| |
|
||||||||||||||| |
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|
| T |
19058011 |
agagtgtttcagaga |
19058025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 205 - 518
Target Start/End: Original strand, 5286030 - 5286344
Alignment:
| Q |
205 |
tggattgatagga--gatgcgttgtggaacaccgatgggcaaggagaatgcatttgcagcattgctcgagttatgccggagtggaggttcagctgcaact |
302 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5286030 |
tggattgataggaatgatgcgttgtggaacaccgaggggtaaggagaatgcagtcgcagcattgctcgagttatgccggagtggaggttcagctgcaact |
5286129 |
T |
|
| Q |
303 |
gaaagggttgttaaggcaccacctattgccggattacttcaaacccaactatttaccgggacaaagcgagctagacgtaaagctgcttcacttgctagag |
402 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
5286130 |
gaaagggtagttaaggcaccagctattgccggattacttcaaaccctattatttaccgggacaaagcgagctagacgtaaagccgcttcacttgctagag |
5286229 |
T |
|
| Q |
403 |
tgtttcagagatgtgaaaatgcatctctacattatggtggattaggtgtaggctatgcattggctagcaattcagctcaaactagggattcaagctttgc |
502 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
5286230 |
tgtttcagagatgtgaaaatgcatctctgcattacggtggattaggtgtaggctatgcatttgctagcaattcagctcaaactagagattcaagctttgc |
5286329 |
T |
|
| Q |
503 |
tgcagagggatgtttc |
518 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
5286330 |
tgcag-gggatgtttc |
5286344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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