View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2479_low_110 (Length: 251)

Name: NF2479_low_110
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2479_low_110
NF2479_low_110
[»] chr1 (1 HSPs)
chr1 (10-251)||(5130464-5130714)
[»] chr5 (9 HSPs)
chr5 (174-248)||(8677636-8677710)
chr5 (174-251)||(1600478-1600555)
chr5 (174-251)||(9074918-9074995)
chr5 (174-249)||(8535332-8535407)
chr5 (175-249)||(8528778-8528852)
chr5 (174-248)||(8644043-8644117)
chr5 (174-251)||(8548289-8548366)
chr5 (177-248)||(8636701-8636772)
chr5 (97-131)||(36551390-36551424)
[»] chr4 (2 HSPs)
chr4 (175-249)||(9442939-9443013)
chr4 (97-129)||(49370040-49370072)
[»] scaffold0627 (1 HSPs)
scaffold0627 (174-251)||(4491-4568)
[»] chr6 (1 HSPs)
chr6 (174-251)||(16716178-16716255)
[»] chr7 (3 HSPs)
chr7 (200-251)||(35779694-35779745)
chr7 (97-131)||(46355860-46355894)
chr7 (174-239)||(48362064-48362129)
[»] chr3 (2 HSPs)
chr3 (97-131)||(26990456-26990490)
chr3 (97-131)||(53519824-53519858)
[»] chr2 (4 HSPs)
chr2 (97-131)||(2610832-2610866)
chr2 (97-131)||(17429294-17429328)
chr2 (97-131)||(39709205-39709239)
chr2 (94-131)||(33504468-33504505)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 5130464 - 5130714
Alignment:
Q  10 agcataggcagtacggtaatgtaggaaactcacacatgtcttatgaatcaaactaattacgattgatttttaagggagcctcagattcaac--------- 100  Q
    |||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||             
T  5130464 agcacaggcggtacagtaatgtaggaaactcacacatgtcttatgaatcaaactaattacgattgatttttaaggaagcctcagattcaacaacaacaac 5130563  T
Q  101 aaccaagccatatctcactaagtggggtcggggagcatcagattcatttgggtaaataaaattttagaagccacttaccttgagtgtatattcagcacct 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5130564 aaccaagccatatctcattaagtggggtcggggagcatcagattcatttgggtaaataaaattttagaagccacttaccttgagtgaatattcagcacct 5130663  T
Q  201 caatattgtctcctttcacaatatccttcattgaaattagacttggaatat 251  Q
    |||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  5130664 caatattgtctcctttcacaatatcctttagtgaaattagacttgaaatat 5130714  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 8677636 - 8677710
Alignment:
Q  174 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaa 248  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  8677636 cttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagacttggaa 8677710  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 1600555 - 1600478
Alignment:
Q  174 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatat 251  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||  | |||||||| ||||||||||||||||||||    
T  1600555 cttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagacttggaatat 1600478  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 9074995 - 9074918
Alignment:
Q  174 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatat 251  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||  | |||||||| ||||||||||||||||||||    
T  9074995 cttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagacttggaatat 9074918  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 8535332 - 8535407
Alignment:
Q  174 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaat 249  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||| || |||||||| ||||||||||||||||||    
T  8535332 cttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagacttggaat 8535407  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 8528778 - 8528852
Alignment:
Q  175 ttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaat 249  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| || |||||||| ||||||||||||||||||    
T  8528778 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaat 8528852  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 8644043 - 8644117
Alignment:
Q  174 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaa 248  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||||| |||||||| ||| |||||||||||||    
T  8644043 cttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagacttggaa 8644117  T

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Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 8548366 - 8548289
Alignment:
Q  174 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatat 251  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||  | |||||||| ||| ||||||||||||||||    
T  8548366 cttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagacttggaatat 8548289  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 8636701 - 8636772
Alignment:
Q  177 accttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaa 248  Q
    |||||||||| |||||||||||||| ||||||||||||||||| | |||||||| ||| |||||||||||||    
T  8636701 accttgagtggatattcagcacctcgatattgtctcctttcacgacatccttcaatgagattagacttggaa 8636772  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 36551424 - 36551390
Alignment:
Q  97 caacaaccaagccatatctcactaagtggggtcgg 131  Q
    ||||||||||||| |||||||||||||||||||||    
T  36551424 caacaaccaagccttatctcactaagtggggtcgg 36551390  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 9442939 - 9443013
Alignment:
Q  175 ttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaat 249  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| || |||||||| ||||||||||||||||||    
T  9442939 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagacttggaat 9443013  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 49370072 - 49370040
Alignment:
Q  97 caacaaccaagccatatctcactaagtggggtc 129  Q
    |||||||||||||||||| ||||||||||||||    
T  49370072 caacaaccaagccatatcccactaagtggggtc 49370040  T

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Target: scaffold0627 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 4491 - 4568
Alignment:
Q  174 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatat 251  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||   |||||||| ||| ||||||||||||||||    
T  4491 cttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagacttggaatat 4568  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 16716178 - 16716255
Alignment:
Q  174 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaattagacttggaatat 251  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||   |||||||| ||| ||||||||||||||||    
T  16716178 cttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagacttggaatat 16716255  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 35779694 - 35779745
Alignment:
Q  200 tcaatattgtctcctttcacaatatccttcattgaaattagacttggaatat 251  Q
    ||||||||||||||||| |||| |||||||| ||| ||||||||||||||||    
T  35779694 tcaatattgtctccttttacaacatccttcaatgatattagacttggaatat 35779745  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 46355860 - 46355894
Alignment:
Q  97 caacaaccaagccatatctcactaagtggggtcgg 131  Q
    ||||||||||||| |||||||||||||||||||||    
T  46355860 caacaaccaagccttatctcactaagtggggtcgg 46355894  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 48362129 - 48362064
Alignment:
Q  174 cttaccttgagtgtatattcagcacctcaatattgtctcctttcacaatatccttcattgaaatta 239  Q
    ||||||||||||| | ||||| |||||| ||||| ||||||||||  | |||||||| ||||||||    
T  48362129 cttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatgaaatta 48362064  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 26990490 - 26990456
Alignment:
Q  97 caacaaccaagccatatctcactaagtggggtcgg 131  Q
    ||||||||||||| |||||||||||||||||||||    
T  26990490 caacaaccaagccttatctcactaagtggggtcgg 26990456  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 53519858 - 53519824
Alignment:
Q  97 caacaaccaagccatatctcactaagtggggtcgg 131  Q
    ||||||||||||| |||||||||||||||||||||    
T  53519858 caacaaccaagccttatctcactaagtggggtcgg 53519824  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 2610866 - 2610832
Alignment:
Q  97 caacaaccaagccatatctcactaagtggggtcgg 131  Q
    ||||||||||||| |||||||||||||||||||||    
T  2610866 caacaaccaagccttatctcactaagtggggtcgg 2610832  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 17429328 - 17429294
Alignment:
Q  97 caacaaccaagccatatctcactaagtggggtcgg 131  Q
    ||||||||||||| |||||||||||||||||||||    
T  17429328 caacaaccaagccttatctcactaagtggggtcgg 17429294  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 39709205 - 39709239
Alignment:
Q  97 caacaaccaagccatatctcactaagtggggtcgg 131  Q
    |||||||||||||||||| ||||||||||||||||    
T  39709205 caacaaccaagccatatcccactaagtggggtcgg 39709239  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 33504505 - 33504468
Alignment:
Q  94 attcaacaaccaagccatatctcactaagtggggtcgg 131  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  33504505 attcaacaaccaagccttatcccactaagtggggtcgg 33504468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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