View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2479_low_112 (Length: 250)
Name: NF2479_low_112
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_112 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 9075289 - 9075379
Alignment:
| Q |
10 |
ataatactgttttttattaaatggaattttaaacagaaattacactcctgggtataaccatggaggatcaacaatgaaatgataaaggtgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9075289 |
ataatactgttttttattaaatggaattttaaacagaaattacactcctgggtataaccatggaggaacaacaatgaaatgataaaggtgt |
9075379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 9075443 - 9075529
Alignment:
| Q |
164 |
tcaaatattctacactcattccttataacccttcagcctagtactaggaaacttcctacactcactacgtcttacttccgtatttcc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9075443 |
tcaaatattctacactcattccttataacccttcagcctagtactaggaaacttcctacactcactacgtcttacttccgtatttcc |
9075529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University