View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_117 (Length: 250)
Name: NF2479_low_117
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_117 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 12703348 - 12703562
Alignment:
| Q |
1 |
aacaacacagtaataaacaatgcagttaacaagtttctaagcgatctattcccaccatgatcttgattaggtaacaaggtgcacctcttcctcttgctgc |
100 |
Q |
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| T |
12703348 |
aacaacacagcaataaacaatgcagttaacaagtttctaagctttct-----caccatgatcttgattaggtaacaaggtgcacctctttctcttgctgc |
12703442 |
T |
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| Q |
101 |
tttgagtactgtcagaggaataaggctcttgaggagaagagacaggttggtcaagttcctcagtaataccactcctttcaagttgttcattctcataatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12703443 |
tttgagtactgtcagaggaataaggctcttgaggtgaagagacaggttgttcaagttcctcagtaataccactcctttcaagttgttcattctcataatc |
12703542 |
T |
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| Q |
201 |
ttctctctttaccaacttcc |
220 |
Q |
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||| | | ||| |||||||| |
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| T |
12703543 |
ttcacccattagcaacttcc |
12703562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 200
Target Start/End: Original strand, 8207280 - 8207427
Alignment:
| Q |
53 |
caccatgatcttgattaggtaacaaggtgcacctcttcctcttgctgctttgagtactgtcagaggaataaggctcttgaggagaagagacaggttggtc |
152 |
Q |
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||||||||||||| |||| ||| ||||| || |||||||| |||||||||| ||| || || || || ||||||||||||||| |||||||||| || |
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| T |
8207280 |
caccatgatcttggctaggaaactcggtgccccgtttcctcttactgctttgagaactatccgaagagtagggctcttgaggagaacagacaggttgttc |
8207379 |
T |
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| Q |
153 |
aagttcctcagtaataccactcctttcaagttgttcattctcataatc |
200 |
Q |
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||||||||| || |||||||||||||| |||||||||||||||||||| |
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| T |
8207380 |
aagttcctcggttataccactcctttcgagttgttcattctcataatc |
8207427 |
T |
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