View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_118 (Length: 250)
Name: NF2479_low_118
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_118 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 54692490 - 54692727
Alignment:
| Q |
13 |
aatattcatctaatggttgaggctattaagaattgaaactctgattttaatgagacgcctaaaacagaaactcaagcccttcttcgaagtcttgaataca |
112 |
Q |
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| T |
54692490 |
aatattcatctaatggttgagactattaagaattgaaactctgattttaatgagacgcctaaaacagaaactcaagcccttcttcgaagtcttgaataca |
54692589 |
T |
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| Q |
113 |
caactccattttctccaatttgttttggagatcattcacttcttcaaacttgctaatcttgttaaacacaaaggattgcaatgctacatccatacttgag |
212 |
Q |
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| T |
54692590 |
caactccattttctccaatttgttttggagatcatttacttcttcaaacttgctaatcttgttaaacacaaaggattgcaatgctacatccatacttgag |
54692689 |
T |
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| Q |
213 |
aaaattcactctcttctgccaatagtgagcaagaaact |
250 |
Q |
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| T |
54692690 |
aaaattcactctcttctgccaatagtgagcaagaaact |
54692727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 54699858 - 54700088
Alignment:
| Q |
17 |
ttcatctaatggttgaggctattaagaattgaaactctgattttaatgagacgcctaaaacagaaactcaagcccttcttcgaagtcttgaatacacaac |
116 |
Q |
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| T |
54699858 |
ttcaactaatggttgaggatattaagaagtgagactctaattttaatgagacgcct-aaacaaaaactcaagcccttcttcaatgtcttgaaggcacgac |
54699956 |
T |
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| Q |
117 |
tccattttctccaatttgttttggagatcattcacttcttcaaacttgctaatcttgttaaacacaaaggattgcaatgctacatccatacttgagaaaa |
216 |
Q |
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| T |
54699957 |
tctgttttctccaagtggttttggagatcattgatgccttcaacttttctattcttggtaaatacaaaggactgcaatgctacatcc--acttgggaaaa |
54700054 |
T |
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| Q |
217 |
ttcactctcttctgccaatagtgagcaagaaact |
250 |
Q |
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| T |
54700055 |
ttcactttcatctgtcaatagtgagcaagcaact |
54700088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 54687919 - 54688004
Alignment:
| Q |
23 |
taatggttgaggctattaagaattgaaactctgattttaatgagacgcctaaaacagaaactcaagcccttcttcgaagtcttgaat |
109 |
Q |
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| T |
54687919 |
taatggttgagaatattaagaagtgaaactctaattttaatgagacgcct-gaatagaaactcaagcccttcttcaaggtcttgaat |
54688004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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