View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_12 (Length: 507)
Name: NF2479_low_12
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_12 |
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| [»] scaffold0830 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 5100238 - 5100052
Alignment:
| Q |
16 |
caaatccaaaatttgatggaagcatgcctgagaaagaatttagttcaagactcaaaatttccaatgttgaaatgttgaagacttttgaaggaataggtcc |
115 |
Q |
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| T |
5100238 |
caaatcccaaatttgatggaagcatgcctgagagagaattttgatcaagatacaaaatttccaatgttgaaatgttgaagacttttgaaggaataggtcc |
5100139 |
T |
|
| Q |
116 |
actcaagctgttatatcccatttgtagaagctgaagttgattgagatggccaatctccattggtattgaacctaacatcacatatca |
202 |
Q |
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|||||||||||||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |||||||| |||| |||||| |
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| T |
5100138 |
actcaagctgttatttcccattagtagaagttgaagttgactgagatggccaatctccattggtatcgaacctaaaatcaaatatca |
5100052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 5117797 - 5117611
Alignment:
| Q |
16 |
caaatccaaaatttgatggaagcatgcctgagaaagaatttagttcaagactcaaaatttccaatgttgaaatgttgaagacttttgaaggaataggtcc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||| |||||||||||| || |
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| T |
5117797 |
caaatccaaaatttgatggaagcatgcctgagaaagaatttagttcaagacgcaaatatttcaatgttgaaatgttgaagacttgtgaaggaataggccc |
5117698 |
T |
|
| Q |
116 |
actcaagctgttatatcccatttgtagaagctgaagttgattgagatggccaatctccattggtattgaacctaacatcacatatca |
202 |
Q |
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| T |
5117697 |
actcaagctgttatttttcataaatagaagctgaagttgattgagatggccaatctcctttggtattgaacctaacatcacatatca |
5117611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 5081748 - 5081934
Alignment:
| Q |
16 |
caaatccaaaatttgatggaagcatgcctgagaaagaatttagttcaagactcaaaatttccaatgttgaaatgttgaagacttttgaaggaataggtcc |
115 |
Q |
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||||||| | ||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
5081748 |
caaatcccagatttgatggaagcatgcctgagaaagaattttgttcaagatgcaaatattccaatgttgaaatgttgaagattttcaaaggaataggtcc |
5081847 |
T |
|
| Q |
116 |
actcaagctgttatatcccatttgtagaagctgaagttgattgagatggccaatctccattggtattgaacctaacatcacatatca |
202 |
Q |
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| T |
5081848 |
gctcaagctgttatttcccatttgtagaagctgaagttgattgagactgccaatctccattggtatcgaacctaaaatcacatatca |
5081934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 313 - 478
Target Start/End: Original strand, 5082327 - 5082492
Alignment:
| Q |
313 |
atacctgtaaaaaggttattttgtaaatataacttttgtaacgatgtgcaattgccaatcgatcgtggaatggttccttcaagaaaattattgtatagaa |
412 |
Q |
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||||||| ||||| ||||| |||||| |||| |||||||| ||||||| |||||||||||||||||||||| |||||| | | |||| | |||| |
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| T |
5082327 |
atacctgaaaaaaagttatcctgtaaagttaacgtttgtaacaatgtgcagttgccaatcgatcgtggaatggctccttctaaatgattaccgagtagag |
5082426 |
T |
|
| Q |
413 |
aaaacaattcaagttgaggaagttgattacacatctcatctggaagagttccatttaaattgttac |
478 |
Q |
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||| | |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
5082427 |
taaatatttcaagttgaggaagttgatgacacatctcgtctggaagagttccatttaaattgttac |
5082492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 218 - 476
Target Start/End: Complemental strand, 5100023 - 5099760
Alignment:
| Q |
218 |
gatgatgaagcgtggtgtaaacacaaatactagtaatattaaaattgtaaaaacaatcaatttaaagtataaagtgaagatagaaagttaaggaa----- |
312 |
Q |
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||||||||||| ||||||||| |||||||||| ||||| ||||| ||||||| | || | ||||||||| || |||||||||||||||| |
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| T |
5100023 |
gatgatgaagcttggtgtaaaaacaaatactaataatacagaaattttaaaaac--ttaactaaaagtataacatgtagatagaaagttaagggtgtacg |
5099926 |
T |
|
| Q |
313 |
--atacctgtaaaaaggttattttgtaaatataacttttgtaacgatgtgcaattgccaatcgatcgtggaatggttccttcaagaaaattattgtatag |
410 |
Q |
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||||||||||||| |||||| ||||||| |||| ||||||| ||||| || || ||||||||| |||||||| |||||||| | |||| | | ||| |
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| T |
5099925 |
gtatacctgtaaaaaagttattctgtaaatgtaacgtttgtaatgatgtacagtttccaatcgatggtggaatgaatccttcaaaatgattactttttag |
5099826 |
T |
|
| Q |
411 |
aaaaaacaattcaagttgaggaagttgattacacatctcatctggaagagttccatttaaattgtt |
476 |
Q |
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| T |
5099825 |
agaaaataattaaagttgaggaagttgaagacacatctcgtctgggagacttccatttaaattgtt |
5099760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 382
Target Start/End: Complemental strand, 5117534 - 5117465
Alignment:
| Q |
313 |
atacctgtaaaaaggttattttgtaaatataacttttgtaacgatgtgcaattgccaatcgatcgtggaa |
382 |
Q |
| |
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||||||||||||| |||||| ||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
5117534 |
atacctgtaaaaaagttattagtgaaatataacttttgtaaaaatgtgcagttgccaatcgatcgtggaa |
5117465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 486
Target Start/End: Complemental strand, 5117469 - 5117436
Alignment:
| Q |
453 |
tggaagagttccatttaaattgttactaccaagg |
486 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
5117469 |
tggaagagttccatttaaattgttactacgaagg |
5117436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 14414053 - 14414239
Alignment:
| Q |
16 |
caaatccaaaatttgatggaagcatgcctgagaaagaatttagttcaagactcaaaatttccaatgttgaaatgttgaagacttttgaaggaataggtcc |
115 |
Q |
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||||||| | ||||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14414053 |
caaatccgagatttgatggaagcatgcctgagaaagaattttgtccaagaaacaaattttccaatgttgaaatgttgaagagttttgaaggaataggtcc |
14414152 |
T |
|
| Q |
116 |
actcaagctgttatatcccatttgtagaagctgaagttgattgagatggccaatctccattggtattgaacctaacatcacatatca |
202 |
Q |
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||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14414153 |
actcaagttgttattccacatttgtagaatctgaagttgattgagatggccaatctccattggtaacgaacctaacatcacatatca |
14414239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 304 - 478
Target Start/End: Original strand, 14414300 - 14414474
Alignment:
| Q |
304 |
gttaaggaaatacctgtaaaaaggttattttgtaaatataacttttgtaacgatgtgcaattgccaatcgatcgtggaatggttccttcaagaaaattat |
403 |
Q |
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||||||| ||||||||||||| |||||| | ||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| |
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| T |
14414300 |
gttaagggtatacctgtaaaaaagttattatataaatataactcttgtaacgatgtgcagttgccaattgatcgtggaatggttccttcaagataattat |
14414399 |
T |
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| Q |
404 |
tgtatagaaaaaacaattcaagttgaggaagttgattacacatctcatctggaagagttccatttaaattgttac |
478 |
Q |
| |
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||| ||| || || || |||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| |
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| T |
14414400 |
tgtgtaggaagaaacttttaagttgaggaagttgattacacgtctcatgtggaagaattccatttaaattgttac |
14414474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 32 - 181
Target Start/End: Complemental strand, 16884491 - 16884342
Alignment:
| Q |
32 |
tggaagcatgcctgagaaagaatttagttcaagactcaaaatttccaatgttgaaatgttgaagacttttgaaggaataggtccactcaagctgttatat |
131 |
Q |
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||||||||||||||||| ||||||||| |||||| |||| ||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||| | |
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| T |
16884491 |
tggaagcatgcctgagagagaatttagctcaagatgcaaatgttccaatgttgaaatgttgaagagtttagaaggaacatgtccactcaagctgttattt |
16884392 |
T |
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| Q |
132 |
cccatttgtagaagctgaagttgattgagatggccaatctccattggtat |
181 |
Q |
| |
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||||||||||||| ||||| ||||||||||| |||||||||||| ||||| |
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| T |
16884391 |
cccatttgtagaacctgaatttgattgagattgccaatctccataggtat |
16884342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 477
Target Start/End: Complemental strand, 1395 - 1270
Alignment:
| Q |
352 |
aacgatgtgcaattgccaatcgatcgtggaatggttccttcaagaaaattattgtatagaaaaaacaattcaagttgaggaagttgattacacatctcat |
451 |
Q |
| |
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||||||||| | |||||||| |||||||||||| ||||||||| | ||| |||| || | |||| ||||||||||||||| ||||| | | |||| |
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| T |
1395 |
aacgatgtggagttgccaattgatcgtggaatgcttccttcaaaatgattgttgtctaaagaaaaatcttcaagttgaggaagatgattgaaaaaatcat |
1296 |
T |
|
| Q |
452 |
ctggaagagttccatttaaattgtta |
477 |
Q |
| |
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||| ||| ||||||||||||||||| |
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| T |
1295 |
ttggtagacttccatttaaattgtta |
1270 |
T |
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