View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2479_low_120 (Length: 249)

Name: NF2479_low_120
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2479_low_120
NF2479_low_120
[»] chr2 (1 HSPs)
chr2 (1-241)||(36286484-36286724)
[»] chr4 (2 HSPs)
chr4 (158-238)||(19262870-19262950)
chr4 (164-211)||(50875155-50875202)
[»] chr6 (2 HSPs)
chr6 (153-212)||(22745474-22745533)
chr6 (157-194)||(5931799-5931836)
[»] chr1 (1 HSPs)
chr1 (166-212)||(43609760-43609806)
[»] scaffold0057 (2 HSPs)
scaffold0057 (162-199)||(30119-30156)
scaffold0057 (161-199)||(50720-50758)
[»] chr8 (2 HSPs)
chr8 (168-212)||(5481971-5482015)
chr8 (166-206)||(27219851-27219891)
[»] chr3 (1 HSPs)
chr3 (161-207)||(14782804-14782850)
[»] chr7 (1 HSPs)
chr7 (157-206)||(31020633-31020682)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 36286724 - 36286484
Alignment:
Q  1 aacaatgatgtattttagtactaaacacataagtgtatatccatttcccttcctcaacaaaacccaagtcagcaattgctgaaagcacaccaacaataac 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36286724 aacaatgatgtattttattactaaacacataagtgtatatccatttcccttcctcaacaaaacccaagtcagcaattgctgaaagcacaccaacaataac 36286625  T
Q  101 agggccatcagatcaaacccctaaacccaacgtatctttaaagaagctcaaactttataacaccgacacttctgatcaaaagtgtgtctggtgtccaaca 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||    
T  36286624 agggccatcagatcaaacccctaaacccaacgtgtctttaaagaagctcaaactctataacaccgacacttctgatcgaaagtgtgtctggtgttcaaca 36286525  T
Q  201 tgtgtcggtgtcaacactcacatacgtgattacattcattt 241  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  36286524 tgtgtcggtgtcaacactcacatatgtgattacattcattt 36286484  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 19262870 - 19262950
Alignment:
Q  158 taacaccgacacttctgatcaaaagtgtgtctggtgtccaacatgtgtcggtgtcaacactcacatacgtgattacattca 238  Q
    |||||||||||||||| || ||| |||||||  |||||| ||||||||||||||||||| | ||| | |||||||||||||    
T  19262870 taacaccgacacttctaataaaaggtgtgtccagtgtccgacatgtgtcggtgtcaacattgacacatgtgattacattca 19262950  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 50875155 - 50875202
Alignment:
Q  164 cgacacttctgatcaaaagtgtgtctggtgtccaacatgtgtcggtgt 211  Q
    ||||||||||||||||| | |||| |||||||| ||||||||||||||    
T  50875155 cgacacttctgatcaaaggcgtgtttggtgtccgacatgtgtcggtgt 50875202  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 22745474 - 22745533
Alignment:
Q  153 ctttataacaccgacacttctgatcaaaagtgtgtctggtgtccaacatgtgtcggtgtc 212  Q
    |||| |||||||||||| |||||||||| ||||||||||||||| |||||  ||||||||    
T  22745474 ctttgtaacaccgacacctctgatcaaaggtgtgtctggtgtccgacatggatcggtgtc 22745533  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 5931799 - 5931836
Alignment:
Q  157 ataacaccgacacttctgatcaaaagtgtgtctggtgt 194  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  5931799 ataacaccgacacttctgattaaaagtttgtctggtgt 5931836  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 43609760 - 43609806
Alignment:
Q  166 acacttctgatcaaaagtgtgtctggtgtccaacatgtgtcggtgtc 212  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||||    
T  43609760 acacttctgatcaaaagcgtgtccagtgtccaacatgtgtcggtgtc 43609806  T

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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 30156 - 30119
Alignment:
Q  162 accgacacttctgatcaaaagtgtgtctggtgtccaac 199  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  30156 accgacacttctgatcaaaggtgtgtctggtgtccaac 30119  T

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Target: scaffold0057; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 50758 - 50720
Alignment:
Q  161 caccgacacttctgatcaaaagtgtgtctggtgtccaac 199  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  50758 caccgacacttctgatcaaaggtgtgtccggtgtccaac 50720  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 5482015 - 5481971
Alignment:
Q  168 acttctgatcaaaagtgtgtctggtgtccaacatgtgtcggtgtc 212  Q
    ||||||||||||| | |||||||||||||||||||| ||||||||    
T  5482015 acttctgatcaaacgcgtgtctggtgtccaacatgtatcggtgtc 5481971  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 27219891 - 27219851
Alignment:
Q  166 acacttctgatcaaaagtgtgtctggtgtccaacatgtgtc 206  Q
    |||||||||||| || |||||||||||||| ||||||||||    
T  27219891 acacttctgatcgaaggtgtgtctggtgtctaacatgtgtc 27219851  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 14782804 - 14782850
Alignment:
Q  161 caccgacacttctgatcaaaagtgtgtctggtgtccaacatgtgtcg 207  Q
    ||||||||||||||||  |||| ||||||||||||||||| ||||||    
T  14782804 caccgacacttctgatggaaagcgtgtctggtgtccaacacgtgtcg 14782850  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 31020633 - 31020682
Alignment:
Q  157 ataacaccgacacttctgatcaaaagtgtgtctggtgtccaacatgtgtc 206  Q
    ||||||||||||||||||||  || ||||||| ||||||||||| |||||    
T  31020633 ataacaccgacacttctgatggaaggtgtgtccggtgtccaacacgtgtc 31020682  T

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