View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_125 (Length: 248)
Name: NF2479_low_125
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_125 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 54687983 - 54688215
Alignment:
| Q |
1 |
gcccttcttcaaggtcttgaatgcatgactctgctttctctaagtgattttggagatcattgatggcttcaagttttctattcttggtaagtacaaaaga |
100 |
Q |
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| T |
54687983 |
gcccttcttcaaggtcttgaatgcatgactctgctttctctaagtgactttggagatcattgatggcttcaagttttctattcttggtaagtataaaaga |
54688082 |
T |
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| Q |
101 |
ctgcaatgctccatccacttgggcaaattcactttcatctgccactagggagcaggaaactcttttgggctgaattaacttggaaatggaaccccagctg |
200 |
Q |
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| T |
54688083 |
ctgcaatgctccatccacttgggcaaattcactttcatctgccactagggagcaggaaactcttttgggctgaattagcttggaaatggaaccccagctg |
54688182 |
T |
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| Q |
201 |
tttgactttgactgtgtggtccctgatataaat |
233 |
Q |
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| T |
54688183 |
tttgactttgactgtgtggtccctgatataaat |
54688215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 54699928 - 54700160
Alignment:
| Q |
1 |
gcccttcttcaaggtcttgaatgcatgactctgctttctctaagtgattttggagatcattgatggcttcaagttttctattcttggtaagtacaaaaga |
100 |
Q |
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| T |
54699928 |
gcccttcttcaatgtcttgaaggcacgactctgttttctccaagtggttttggagatcattgatgccttcaacttttctattcttggtaaatacaaagga |
54700027 |
T |
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| Q |
101 |
ctgcaatgctccatccacttgggcaaattcactttcatctgccactagggagcaggaaactcttttgggctgaattaacttggaaatggaaccccagctg |
200 |
Q |
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| T |
54700028 |
ctgcaatgctacatccacttgggaaaattcactttcatctgtcaatagtgagcaagcaactcttttcggctgaataagtttggaaatggaaccccagctg |
54700127 |
T |
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| Q |
201 |
tttgactttgactgtgtggtccctgatataaat |
233 |
Q |
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| T |
54700128 |
tttgattttgactgtgttgtccccgagataaat |
54700160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 54692612 - 54692787
Alignment:
| Q |
48 |
ttttggagatcattgatggcttcaagttttctattcttggtaagtacaaaagactgcaatgctccatcca--cttgggcaaattcactttcatctgccac |
145 |
Q |
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| T |
54692612 |
ttttggagatcatttacttcttcaaacttgctaatcttgttaaacacaaaggattgcaatgctacatccatacttgagaaaattcactctcttctgccaa |
54692711 |
T |
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| Q |
146 |
tagggagcaggaaactcttttg---ggctgaattaacttggaaatggaaccccagctgtttgactttgactgtgtg |
218 |
Q |
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| T |
54692712 |
tagtgagcaagaaactcttttattaggctgaattagcttggaaatggaaagccaagtgtttgactttgactgtgtg |
54692787 |
T |
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