View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_128 (Length: 248)
Name: NF2479_low_128
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_128 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 37165151 - 37165395
Alignment:
| Q |
1 |
aaaccagaaacacatgaagaaagtagtcaagaagataaaaggccaatttatttgagtgtggcattgggatttatcacaggattttggggcctatggggat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37165151 |
aaaccagaaacacatgaagaaagtagtcaagaagataaaaagccaatttatttgagtgtggcattgggatttatcacaggattttggggcctatggggat |
37165250 |
T |
|
| Q |
101 |
cattgtttcttagccgtaattggagacatacatatgtcctgtttttgaactacataattgacacagtgtatgtgtttatggtgctgaatgtaaataaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37165251 |
cattgtttcttagccgtaattggagacatacatatgtcctgtttttgaactacataattgacacagtgtatgtgtttatggtgctgaatgtaaataaatt |
37165350 |
T |
|
| Q |
201 |
tcaaaggcggcttagaggctttctggtaatcttttcttctcactc |
245 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37165351 |
tcaaaggcggcttagaggctttctggtaatcttttcttttcactc |
37165395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37132700 - 37132937
Alignment:
| Q |
1 |
aaaccagaaacacatgaagaaagtagtcaagaagataaaaggccaatttatttgagtgtggcattgggatttatcacaggattttggggcctatggggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37132700 |
aaaccagaaacacatgaagaaagtagtcaagaagataaaaagccaatttatttgagcgtgacattgggatttatcacaggattttggggcctatggggat |
37132799 |
T |
|
| Q |
101 |
cattgtttcttagccgtaattggagacatacatatgtcctgtttttgaactacataattgacacagtgtatgtgtttatggtgctgaatgtaaataaatt |
200 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||| | | |||| |
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| T |
37132800 |
cattgtttcttagccgtacttggagacatacatatgtcttgtttttgaactacatagttgacacagtgtatgtgtttatcgtgctgaatgccactgaatt |
37132899 |
T |
|
| Q |
201 |
tcaaaggcggcttagaggctttctggtaatcttttctt |
238 |
Q |
| |
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||||| | |||| ||||| || |||| || |||||||| |
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| T |
37132900 |
tcaaatgtggctgagaggattgctggaaaccttttctt |
37132937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 37139786 - 37140022
Alignment:
| Q |
1 |
aaaccagaaacacatgaagaaagtagtcaagaagataaaaggccaatttatttgagtgtggcattgggatttatcacaggattttggggcctatggggat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||| |
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| T |
37139786 |
aaaccagaaacacatgaagaaagaagtcaagaagataaaaaaccaatttatttgtgtgtgacattgggatttatgactggattttggggcctatggggat |
37139885 |
T |
|
| Q |
101 |
cattgtttcttagccgtaattggagacatacatatgtcctgtttttgaactacataattgacacagtgtatgtgtttatggtgctgaatgtaaataaatt |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |
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| T |
37139886 |
cattgtttcttagccgaaattggagacatgcatatgtcttgtttttgaactacataattgacacagtgtatgtgtttatggtgctgaatgcaattgaatt |
37139985 |
T |
|
| Q |
201 |
tcaaaggcggcttagaggctttctggtaatcttttct |
237 |
Q |
| |
|
||||| | |||| ||||| || ||||||| ||||||| |
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|
| T |
37139986 |
tcaaatgtggctgagaggattgctggtaaccttttct |
37140022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 35142720 - 35142485
Alignment:
| Q |
1 |
aaaccagaaacacatgaagaaagtagtcaagaagataaaagg-ccaatttatttgagtgtggcattgggatttatcacaggattttggggcctatgggga |
99 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| || ||||| |
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| T |
35142720 |
aaaccagaaacacatgaacaaagtagtcaagaagataaaaaaaccaatttatttgaatgtggcattgggatttatcacaggattttcgggactttggggc |
35142621 |
T |
|
| Q |
100 |
tcattgtttcttagccgtaattggagacatacatatgtcctgtttttgaactacataattgacacagtgtatgtgtttatggtgctgaatgtaaataaat |
199 |
Q |
| |
|
|| |||||||| ||| |||||||||||| |||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||| | || ||||| |
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|
| T |
35142620 |
tctttgtttctctgccagaattggagacatgcatatgtcttgttcttgaacaacatatttgacacagtgtatgtgtttatggtgctgaaggcaactaaat |
35142521 |
T |
|
| Q |
200 |
ttcaaaggcggcttagaggctttctggtaatctttt |
235 |
Q |
| |
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|||||| | ||||||||||||| ||||||| ||||| |
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| T |
35142520 |
ttcaaaagtggcttagaggcttgctggtaacctttt |
35142485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 38749357 - 38749464
Alignment:
| Q |
1 |
aaaccagaaacacatgaagaaagtagtcaagaagataaaaggccaatttatttgagtgtggcattgggatttatcacaggattttggggcctat-gggga |
99 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| |
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|
| T |
38749357 |
aaaccagaaacaccagaagaaagtagtccagaagataaaaaaccaatttatttgagtgtggcatcgggatttatcacaggattttggggactatggggga |
38749456 |
T |
|
| Q |
100 |
tcattgtt |
107 |
Q |
| |
|
|||||||| |
|
|
| T |
38749457 |
tcattgtt |
38749464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 3022423 - 3022203
Alignment:
| Q |
18 |
agaaagtagtcaagaagataaaaggccaatttatttgagtgtggcattgggatttatcacaggattttggggcctatggggatcattgtttcttagccgt |
117 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || | |
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|
| T |
3022423 |
agaaagtagtccagaagataaaaaaccaatttatttgagtgtggcattgggatttatcacaggattttggggactatggggatcatttctgctgtggaag |
3022324 |
T |
|
| Q |
118 |
aattggagacatacatatgtcctgtttttgaactacataattgacacagtgtatgtgtttatggtgctgaatgtaaataaatttcaaaggcggcttagag |
217 |
Q |
| |
|
| |||||||||| |||||||| |||| ||| || |||||||||||||| |||||||||||||||||||||||| || ||| |||| ||| ||||||||| |
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|
| T |
3022323 |
acttggagacatgcatatgtcttgttcttggacaacataattgacacaatgtatgtgtttatggtgctgaatgcaactaagtttcgaagatggcttagag |
3022224 |
T |
|
| Q |
218 |
gctttctggtaatcttttctt |
238 |
Q |
| |
|
|||| |||||| |||||||| |
|
|
| T |
3022223 |
gcttgttggtaaacttttctt |
3022203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 11242488 - 11242361
Alignment:
| Q |
1 |
aaaccagaaacacatgaagaaagtagtcaagaagataaaaggccaatttatttgagtgtggcattgggatttatcacaggattttggggcctatggggat |
100 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| | |||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |
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|
| T |
11242488 |
aaaccagaaacttttgaagaaagtagtccagaagatatgaattcaatttatttgagtgtggcattaggatttattacaggattttggggcctttggggat |
11242389 |
T |
|
| Q |
101 |
cattgtttcttagccgtaattggagaca |
128 |
Q |
| |
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||||| | ||| ||| ||||||||||| |
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|
| T |
11242388 |
cattgctgtttatccggaattggagaca |
11242361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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