View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_129 (Length: 247)
Name: NF2479_low_129
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_129 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 34629607 - 34629386
Alignment:
| Q |
1 |
taaatgcaagaaatacttttccatagggaaattttgtaccttgtctcactgaatgatttataatggcaatatcccaaaccactttaagagtaagtta-at |
99 |
Q |
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| T |
34629607 |
taaatgcaagaaatacttttccatagggaaattttgtaccttgtctcactgaatgatttataatggcaatatcccaaaccagtttaagagtaagttacat |
34629508 |
T |
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| Q |
100 |
gattggaatattacaattgaaaatgattttagatcgtatcatttgatactaataatatcgtgatgtatgataatgttatttgtcaaattatcatttatat |
199 |
Q |
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| T |
34629507 |
gattggaatattacaattgaaaatgattttagatcgtatcatttgatac---taatatcgtgatgtatgataatgttatttgtcaaattatcatttatat |
34629411 |
T |
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| Q |
200 |
attgattatgaatactgccactagt |
224 |
Q |
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| T |
34629410 |
attgattatgaatactgccactagt |
34629386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 14298255 - 14298196
Alignment:
| Q |
173 |
tgttatttgtcaaattatcatttatatattgattatgaatactgccactagtgaagacac |
232 |
Q |
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| T |
14298255 |
tgttatttgtcaaattattatttatatattgattataaatactacgactcgtgaagacac |
14298196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 14298343 - 14298307
Alignment:
| Q |
109 |
attacaattgaaaatgattttagatcgtatcatttga |
145 |
Q |
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| T |
14298343 |
attacaattgaaaatgattttagatagtatcatttga |
14298307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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