View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_130 (Length: 247)
Name: NF2479_low_130
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_130 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 36286933 - 36286703
Alignment:
| Q |
16 |
atatcatccgacttaagttcttccctttccaattctaataaaagctcgatcgctgcattacccagtccatgtaaatcaagtccagagatcaaagaattcc |
115 |
Q |
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| T |
36286933 |
atatcatccgacttaagttcttccctttccaattctaaaaaaagctcgatcgctgcatgacccagtccatgtaaatcaagtccagagatcaaagaattcc |
36286834 |
T |
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| Q |
116 |
aatcccaacattccttcagttacaaatgcttctaaatacactatgagcattttctatctggctacatttaacgtacatgttaacaagtactgattcaatn |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36286833 |
aatcccaacattccttcagttacaaatgcttctaaatacactatgagcattttctatctggccacatttaacgtacatgttaacaagtactgattcaat- |
36286735 |
T |
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| Q |
216 |
nnnnnnctaaaacaatgatgtattttattact |
247 |
Q |
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|||||||||||||||||||||||||| |
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| T |
36286734 |
aaaaaactaaaacaatgatgtattttattact |
36286703 |
T |
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