View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2479_low_134 (Length: 242)

Name: NF2479_low_134
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2479_low_134
NF2479_low_134
[»] chr1 (1 HSPs)
chr1 (1-230)||(5130907-5131137)
[»] chr7 (3 HSPs)
chr7 (58-176)||(48361643-48361764)
chr7 (127-176)||(35780079-35780128)
chr7 (58-90)||(35780022-35780054)
[»] chr4 (1 HSPs)
chr4 (116-175)||(9443353-9443412)
[»] chr5 (12 HSPs)
chr5 (116-176)||(1600091-1600151)
chr5 (29-176)||(8644377-8644524)
chr5 (119-176)||(2844854-2844911)
chr5 (119-176)||(2856681-2856738)
chr5 (119-176)||(2874291-2874348)
chr5 (53-175)||(8529132-8529251)
chr5 (116-172)||(8641635-8641691)
chr5 (116-176)||(9074517-9074577)
chr5 (127-176)||(2904797-2904846)
chr5 (116-176)||(8547897-8547957)
chr5 (53-90)||(8535690-8535727)
chr5 (58-90)||(1600180-1600212)
[»] scaffold0627 (1 HSPs)
scaffold0627 (58-90)||(4841-4873)
[»] chr6 (1 HSPs)
chr6 (54-90)||(16716536-16716572)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5130907 - 5131137
Alignment:
Q  1 ctgtaaaccttagtccatgattccgcaatgcaacattatggaaagaacatgtatcagaaatgtaaagcaatccctttaattctcccatgccgatatgctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5130907 ctgtaaaccttagtccatgattccgcaatgcaacattatggaaagaacacgcatcagaaatgtaaagaaatccctttaattctcccatgccgatatgctc 5131006  T
Q  101 ggtgccataaaaatgattatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaagt-aaacacaacaatgaccttttt 199  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  5131007 ggtgccataaaaatcattatgattttcaaacacgtgtggaggagaagggaatgattgcaatctctcactttcaaaactgaaacacaacaatgaccttttt 5131106  T
Q  200 ccaagatcatatatgatccaatgaagtgtgt 230  Q
    | |||||||||||||||||||||||||||||    
T  5131107 ctaagatcatatatgatccaatgaagtgtgt 5131137  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 176
Target Start/End: Complemental strand, 48361764 - 48361643
Alignment:
Q  58 aaatgtaaagcaatccctttaattctcccatgccgatatgctcggtgccataaaa---atgattatgattttcaaacacatgtggaggagaagggaatga 154  Q
    |||||||||| ||||||||||||||||||||||  ||||||  | | |||  ||    || |||||||||| |||||||||||||||||||||| |||||    
T  48361764 aaatgtaaagaaatccctttaattctcccatgctaatatgcctgttaccaagaattccattattatgatttccaaacacatgtggaggagaaggaaatga 48361665  T
Q  155 ttgcaatctctcactttcaaaa 176  Q
     ||||  |||||||||||||||    
T  48361664 ctgcaccctctcactttcaaaa 48361643  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 35780079 - 35780128
Alignment:
Q  127 caaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 176  Q
    |||||||||||||||||||||| ||||  ||||| ||||||| |||||||    
T  35780079 caaacacatgtggaggagaaggaaatggctgcaacctctcaccttcaaaa 35780128  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 35780022 - 35780054
Alignment:
Q  58 aaatgtaaagcaatccctttaattctcccatgc 90  Q
    |||||||||| ||||||||||||||||||||||    
T  35780022 aaatgtaaagaaatccctttaattctcccatgc 35780054  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 9443353 - 9443412
Alignment:
Q  116 attatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaa 175  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  9443353 attatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcactttcaaa 9443412  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 1600151 - 1600091
Alignment:
Q  116 attatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 176  Q
    |||||||||| ||||| |||||||||||||||| ||||| ||||| |||||||||||||||    
T  1600151 attatgatttccaaactcatgtggaggagaaggaaatgactgcaacctctcactttcaaaa 1600091  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 8644377 - 8644524
Alignment:
Q  29 tgcaacattatggaaagaacatgtatcagaaatgtaaagcaatccctttaattctcccatgccgatatgctcggtgccataaaa---atgattatgattt 125  Q
    |||||||| | | |||||| |||||||  |||||||||| |||||| |||||||||||||||  ||| ||||| | | |  |||   || ||| ||||||    
T  8644377 tgcaacatcacgaaaagaatatgtatcgcaaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattt 8644476  T
Q  126 tcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 176  Q
    | ||||||   |||||||||||| ||||||||||| |||||||||||||||    
T  8644477 tgaaacac---tggaggagaaggaaatgattgcaacctctcactttcaaaa 8644524  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 2844911 - 2844854
Alignment:
Q  119 atgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 176  Q
    ||||||| |||||||||||||||||||||| || || ||||| |||||||||||||||    
T  2844911 atgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaa 2844854  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 2856738 - 2856681
Alignment:
Q  119 atgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 176  Q
    ||||||| |||||||||||||||||||||| || || ||||| |||||||||||||||    
T  2856738 atgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaa 2856681  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 2874348 - 2874291
Alignment:
Q  119 atgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 176  Q
    ||||||| |||||||||||||||||||||| || || ||||| |||||||||||||||    
T  2874348 atgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaa 2874291  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 8529132 - 8529251
Alignment:
Q  53 atcagaaatgtaaagcaatccctttaattctcccatgccgatatgctcggtgccataaaaatgattatgattttcaaacacatgtggaggagaagggaat 152  Q
    |||| ||||||| || ||||||||||||||||||||||  ||| ||    | | | |||||  |||||||||| |||||||||||||||||||||| ||     
T  8529132 atcacaaatgtatagaaatccctttaattctcccatgctaataggcc---tacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaac 8529228  T
Q  153 gattgcaatctctcactttcaaa 175  Q
    || ||||| |||||| |||||||    
T  8529229 gactgcaacctctcattttcaaa 8529251  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 8641635 - 8641691
Alignment:
Q  116 attatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttc 172  Q
    |||||||||| |||||||||||||||||||||| ||| | | |||||||||||||||    
T  8641635 attatgatttccaaacacatgtggaggagaaggaaataacttcaatctctcactttc 8641691  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 9074577 - 9074517
Alignment:
Q  116 attatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 176  Q
    |||||| ||| |||||||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  9074577 attatggtttccaaacacatgcggaggagaaggaaatgactgcaacctctcactttcaaaa 9074517  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 2904846 - 2904797
Alignment:
Q  127 caaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 176  Q
    |||||| ||||||||||||||| ||||||||||  |||||||||||||||    
T  2904846 caaacatatgtggaggagaaggaaatgattgcatcctctcactttcaaaa 2904797  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 8547957 - 8547897
Alignment:
Q  116 attatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 176  Q
    |||||||||||||||||||  || ||||||||| |||||||| || ||||| |||||||||    
T  8547957 attatgattttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaa 8547897  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 8535690 - 8535727
Alignment:
Q  53 atcagaaatgtaaagcaatccctttaattctcccatgc 90  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  8535690 atcacaaatgtaaagaaatccctttaattctcccatgc 8535727  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 1600212 - 1600180
Alignment:
Q  58 aaatgtaaagcaatccctttaattctcccatgc 90  Q
    |||||||||| ||||||||||||||||||||||    
T  1600212 aaatgtaaagaaatccctttaattctcccatgc 1600180  T

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Target: scaffold0627 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 4841 - 4873
Alignment:
Q  58 aaatgtaaagcaatccctttaattctcccatgc 90  Q
    |||||||||| ||||||||||||||||||||||    
T  4841 aaatgtaaagaaatccctttaattctcccatgc 4873  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 16716536 - 16716572
Alignment:
Q  54 tcagaaatgtaaagcaatccctttaattctcccatgc 90  Q
    ||||||||||| || ||||||||||||||||||||||    
T  16716536 tcagaaatgtatagaaatccctttaattctcccatgc 16716572  T

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