View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2479_low_135 (Length: 242)
Name: NF2479_low_135
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_135 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 33884449 - 33884215
Alignment:
| Q |
8 |
agatttttctctgaaagatcaatttctgtcaaattcaatgcttcaaccaaacttggtatctctccaaagagactatttctgtaaaggtacactatgctca |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33884449 |
agattattctctgaaagatcaatttctgtcaaattcaatgcttcaaccaaacttggtatctctccaaagagactatttctgtaaaggtacactatgctca |
33884350 |
T |
|
| Q |
108 |
aattctttagcatgaacaaaccatttggaatttttccactcaaaaaatttcctgataaatccaaatactccaaagccatcatttcaccaattgttacagg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33884349 |
aattctttagcatgaacaaaccatttggaatttttccactcaaaaaatttcctgataaatccaaatactccaaagccatcatttcaccaattgttacagg |
33884250 |
T |
|
| Q |
208 |
aatctcaccaaacaagttggagtcctaaatatgaa |
242 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| |
|
|
| T |
33884249 |
aatctcaccaaacaagttggagtcatacatatgaa |
33884215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 231
Target Start/End: Original strand, 33897036 - 33897253
Alignment:
| Q |
8 |
agatttttctctgaaagatcaatttctgtcaaattcaatgcttcaaccaaacttggtatctctccaaagagactatttctgtaaaggtacactatgctca |
107 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33897036 |
agattattttctgaaagatcaatttctatcaaattcaatgct--------acttggtatctctccaaagagactatttctgtaaagatacactatgctca |
33897127 |
T |
|
| Q |
108 |
aattctttagcatgaacaaaccatttggaatttttccactcaaaaaatttcctgataaatccaaatactccaaagc---catcatttcaccaattgttac |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| | |||||||| |||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
33897128 |
aattctttagcatgaacaaaccatttggaatttttacacttataaaatttcgtgataaatccaaatactccaaagccatcatcatttcaccaattgtttc |
33897227 |
T |
|
| Q |
205 |
aggaatctcaccaaacaagttggagtc |
231 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
33897228 |
aggaatc-caccaaacaagttggagtc |
33897253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 62 - 242
Target Start/End: Complemental strand, 33915467 - 33915287
Alignment:
| Q |
62 |
ggtatctctccaaagagactatttctgtaaaggtacactatgctcaaattctttagcatgaacaaaccatttggaatttttccactcaaaaaatttcctg |
161 |
Q |
| |
|
|||||||||||| | ||| |||| |||||| || |||||||||||||| || | | ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33915467 |
ggtatctctccagaaagattattctggtaaagataaactatgctcaaatttttcaaactaaacaaaccatttggaatctttccactcaaaaaatttcctg |
33915368 |
T |
|
| Q |
162 |
ataaatccaaatactccaaagccatcatttcaccaattgttacaggaatctcaccaaacaagttggagtcctaaatatgaa |
242 |
Q |
| |
|
| |||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
33915367 |
acaaatccaaatcctccaaagacatcatttcaccaattgtttcaggaatctcaccaaacaagttggagtcatacatatgaa |
33915287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 33896834 - 33896960
Alignment:
| Q |
19 |
tgaaagatcaatttctgtcaaattcaatgcttcaaccaaacttggtatctctccaaagagactatttctgtaaaggtacactatgctcaaattctttagc |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| |
|
|
| T |
33896834 |
tgaaagatcaatttttgtcaaattcaatgcttcaaccacatttggtatctctccaaagagactattcatcgcaaggtacactgtgctcaaattctttagc |
33896933 |
T |
|
| Q |
119 |
atgaacaaaccatttggaatttttcca |
145 |
Q |
| |
|
|||||||||| | |||||||||||||| |
|
|
| T |
33896934 |
atgaacaaactacttggaatttttcca |
33896960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University