View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2479_low_136 (Length: 241)

Name: NF2479_low_136
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2479_low_136
NF2479_low_136
[»] chr4 (13 HSPs)
chr4 (42-228)||(7772845-7773047)
chr4 (144-212)||(45384085-45384153)
chr4 (142-206)||(7779120-7779183)
chr4 (144-203)||(49040384-49040444)
chr4 (45-108)||(50249783-50249844)
chr4 (149-213)||(7787475-7787540)
chr4 (144-212)||(45365274-45365343)
chr4 (144-227)||(48899530-48899615)
chr4 (144-199)||(7790868-7790924)
chr4 (45-108)||(37826024-37826088)
chr4 (149-224)||(50667113-50667188)
chr4 (144-203)||(50674655-50674715)
chr4 (156-228)||(7879172-7879246)
[»] chr1 (3 HSPs)
chr1 (154-212)||(24381868-24381927)
chr1 (146-193)||(24341215-24341263)
chr1 (146-193)||(24353580-24353628)
[»] chr7 (1 HSPs)
chr7 (80-108)||(48884815-48884843)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 7772845 - 7773047
Alignment:
Q  42 acaagtccactgatattagagaacaaaactttatttt---ccttcaacatgtataaactcatcagattaa------------aacaatttcaagcagtga 126  Q
    |||||||||||||||||||||||||||| ||||||||   ||||||||||||||||||||||||||||||            ||||||||||||||||||    
T  7772845 acaagtccactgatattagagaacaaaaatttatttttttccttcaacatgtataaactcatcagattaatttaccatataaaacaatttcaagcagtga 7772944  T
Q  127 cagattgagttacatatcacaaacaaagttgtcaatatttcc-ataagcatatgacaaatagttaaccaataaacattccacgacataatggttcagctc 225  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| ||| ||||| ||||||||    
T  7772945 cagattgagttacacatcacaaacaaagttgtcaatatttccaataagcctatgacaaataattaaccaataaacattccatgacgtaatgattcagctc 7773044  T
Q  226 att 228  Q
    |||    
T  7773045 att 7773047  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 45384085 - 45384153
Alignment:
Q  144 cacaaacaaagttgtcaatatttccataagcatatgacaaatagttaaccaataaacattccacgacat 212  Q
    |||||||| ||||||||||||||| |||||||||| |||||| ||||||||||| ||||| || |||||    
T  45384085 cacaaacagagttgtcaatatttcaataagcatattacaaattgttaaccaatagacattgcatgacat 45384153  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 7779120 - 7779183
Alignment:
Q  142 atcacaaacaaagttgtcaatatttcc-ataagcatatgacaaatagttaaccaataaacattcca 206  Q
    |||||||| |||||||||||||||||| |||||||||  ||||||||| |||||||||||||||||    
T  7779120 atcacaaagaaagttgtcaatatttccaataagcata--acaaatagtcaaccaataaacattcca 7779183  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 49040384 - 49040444
Alignment:
Q  144 cacaaacaaagttgtcaatatttcca-taagcatatgacaaatagttaaccaataaacatt 203  Q
    |||||||||||||||||||||| ||| ||||||||| ||| |||||||||||||| |||||    
T  49040384 cacaaacaaagttgtcaatattaccaataagcatattacagatagttaaccaatatacatt 49040444  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 50249783 - 50249844
Alignment:
Q  45 agtccactgatattagagaacaaaactttattttccttcaacatgtataaactcatcagattaa 108  Q
    |||||||||| ||||||||||||||| ||  |||||||||| ||| ||||||||||||||||||    
T  50249783 agtccactgaaattagagaacaaaacctt--tttccttcaatatgcataaactcatcagattaa 50249844  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 7787540 - 7787475
Alignment:
Q  149 acaaagttgtcaatatttcc-ataagcatatgacaaatagttaaccaataaacattccacgacata 213  Q
    |||||||||||||||||| | |||||||||||||||| ||| ||| |||||||||| || ||||||    
T  7787540 acaaagttgtcaatattttcgataagcatatgacaaacagtaaacgaataaacatttcatgacata 7787475  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 45365274 - 45365343
Alignment:
Q  144 cacaaacaaagttgtcaatatttcca-taagcatatgacaaatagttaaccaataaacattccacgacat 212  Q
    ||||||||||| | ||||| |||||| ||||||||| |||||| ||||||||||||||||| || |||||    
T  45365274 cacaaacaaagatatcaatgtttccaataagcatattacaaattgttaaccaataaacattgcatgacat 45365343  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 227
Target Start/End: Complemental strand, 48899615 - 48899530
Alignment:
Q  144 cacaaacaaagttgtcaatatttcca-taagcatatgacaaa-tagttaaccaataaacattccacgacataatggttcagctcat 227  Q
    ||||||||||| |||||||||||||| |||||||||  |||| |||| || ||||||||||| || |||||| ||| |||||||||    
T  48899615 cacaaacaaagctgtcaatatttccaataagcatattgcaaaatagtgaaacaataaacatttcatgacatattggatcagctcat 48899530  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 7790924 - 7790868
Alignment:
Q  144 cacaaacaaagttgtcaatatttcca-taagcatatgacaaatagttaaccaataaa 199  Q
    |||||||||||  ||||||||||||| || ||||||||||||| |||||||||||||    
T  7790924 cacaaacaaagcagtcaatatttccaatatgcatatgacaaatcgttaaccaataaa 7790868  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 37826024 - 37826088
Alignment:
Q  45 agtccactgatattagagaacaaaacttta-ttttccttcaacatgtataaactcatcagattaa 108  Q
    |||||||||| ||||||||||||||| ||| ||||||||||| ||| |||| ||||||| |||||    
T  37826024 agtccactgaaattagagaacaaaaccttatttttccttcaatatgcataacctcatcaaattaa 37826088  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 50667188 - 50667113
Alignment:
Q  149 acaaagttgtcaatatt-tccataagcatatgacaaatagttaaccaataaacattccacgacataatggttcagct 224  Q
    ||||||||||||||||| || |||||||||| ||||| ||||||||||||||  || || |||||||||| ||||||    
T  50667188 acaaagttgtcaatattctcaataagcatattacaaa-agttaaccaataaatgtttcatgacataatggatcagct 50667113  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 50674715 - 50674655
Alignment:
Q  144 cacaaacaaagttgtcaatatttcc-ataagcatatgacaaatagttaaccaataaacatt 203  Q
    ||||||||||| ||||||||||||| ||||||||||  ||| |||||||| ||||||||||    
T  50674715 cacaaacaaagctgtcaatatttccaataagcatattgcaactagttaacaaataaacatt 50674655  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 7879246 - 7879172
Alignment:
Q  156 tgtcaatatttcca-taagcatatgacaaat-agttaaccaataaacattccacgacataatggttcagctcatt 228  Q
    |||||||||||||| |||||||| ||||| | ||| ||||| ||||||||||| |||||| ||||||| ||||||    
T  7879246 tgtcaatatttccaataagcatacgacaatttagtcaaccagtaaacattccatgacatattggttcacctcatt 7879172  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 24381927 - 24381868
Alignment:
Q  154 gttgtcaatatttcca-taagcatatgacaaatagttaaccaataaacattccacgacat 212  Q
    |||||||||||||||| ||| ||| | |||||||||||||||||||||||| || |||||    
T  24381927 gttgtcaatatttccaataaacatgttacaaatagttaaccaataaacatttcatgacat 24381868  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 24341263 - 24341215
Alignment:
Q  146 caaacaaagttgtcaatatttcc-ataagcatatgacaaatagttaacc 193  Q
    ||||||||||||| ||||||||| |||| ||||| ||||||||||||||    
T  24341263 caaacaaagttgttaatatttccaataaacatattacaaatagttaacc 24341215  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 24353628 - 24353580
Alignment:
Q  146 caaacaaagttgtcaatatttcc-ataagcatatgacaaatagttaacc 193  Q
    ||||||||||||| ||||||||| |||| ||||| ||||||||||||||    
T  24353628 caaacaaagttgttaatatttccaataaacatattacaaatagttaacc 24353580  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 108
Target Start/End: Complemental strand, 48884843 - 48884815
Alignment:
Q  80 cttcaacatgtataaactcatcagattaa 108  Q
    |||||||||||||||||||||||||||||    
T  48884843 cttcaacatgtataaactcatcagattaa 48884815  T

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