View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_139 (Length: 238)
Name: NF2479_low_139
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_139 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 33883501 - 33883721
Alignment:
| Q |
18 |
ctgggaacttgtcctctataaatgaagttgatttgggttatgcgtgaaccaaaaacaaccaaatgaaaaaatccatcatgtcaattcttctcttcatttt |
117 |
Q |
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| T |
33883501 |
ctgggaacttgtcctctataaatgaagttgatttgggttatgtgtgaaccaaaaacaaccaaatgaaaaaatccatcatgtcaattcttctcttcatttt |
33883600 |
T |
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| Q |
118 |
ctttttcatctatgcaaattgtgaatctcagctatacaatcaagaacatgaaatcctattaagcataaaaaaccatttccaaaatccatcattccttagt |
217 |
Q |
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| T |
33883601 |
ctttttcatctatgcaaattgtgaatctcagctatacaatcaagaacatgaaatcctattaagcataaaaaaccatttccaaaatccatcattccttagt |
33883700 |
T |
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| Q |
218 |
cattggacaaaatcaaacact |
238 |
Q |
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| T |
33883701 |
cattggacaaaatcaaacact |
33883721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 33897928 - 33897762
Alignment:
| Q |
68 |
aaaaacaaccaaatgaaaaaatccatcatgtcaattcttctcttcattttctttttcatctatgcaaattgtgaatctcagctatacaatcaagaacatg |
167 |
Q |
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| T |
33897928 |
aaaaacaactaaatgaagatattcatcatgtcaattcttctcttcattttctttttcacctatggaaactctgaatctcagctgtataatcaagaacatg |
33897829 |
T |
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| Q |
168 |
aaatcctattaagcataaaaaaccatttccaaaatccatcattccttagtcattggacaaaatcaaa |
234 |
Q |
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| T |
33897828 |
aaatcctattaaacataaaaaagcactttcagaatccatcattccttagtcattggataaaatcaaa |
33897762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 33914696 - 33914793
Alignment:
| Q |
141 |
aatctcagctatacaatcaagaacatgaaatcctattaagcataaaaaaccatttccaaaatccatcattccttagtcattggacaaaatcaaacact |
238 |
Q |
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| T |
33914696 |
aatctcacttatacaatcaagaacatgaaatcctattaaaaataaaaaaccattttcaaaatccatcatttcttagtcattggacaatatccaacact |
33914793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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