View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_14 (Length: 503)
Name: NF2479_low_14
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 10124715 - 10125215
Alignment:
| Q |
1 |
gtggtggtggaggatgtgatggttgaggaatattcaaggttagtggcaatggttgttgtggaagtggtggaatatttgggtgggcaaacattctttgaaa |
100 |
Q |
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| T |
10124715 |
gtggtggaggaggatgtgatggttgaggaatattcaaggttaacggcaatggttgttgttgaagtggtggaatatttgggtgggcaaacattctttgaaa |
10124814 |
T |
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| Q |
101 |
cggggttaacatcggaagaggaagactttgtgtgggttgttcagagtcattcattgttctctaatgggttgtgatttgtgaaagaaatcagagagaaaac |
200 |
Q |
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| T |
10124815 |
cggggttaacatcggaagaggaagactttgtgtgggttgttcagagtcattcattgttctctaatgggttgtgatttttgaaagaaatcagagagaaaac |
10124914 |
T |
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| Q |
201 |
gtagaatcaaaaggtttgttacgtgaaagaatgcataaattcaagggaatgagtaagactagggtatgacattggatagatatgagcaagactggtaaca |
300 |
Q |
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| T |
10124915 |
gtagaatcaaaaggtttgttacgtgaaataatgcataaattcaagggaatgagtaagactagggtctgacattggatagatatgagcaagactggtaaca |
10125014 |
T |
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| Q |
301 |
aaaactcctaacttgttgcaaattttttaggctaccatataactaaaccatatccnnnnnnnnnnnntcatatgattaaatcaaatgcctttgaattaaa |
400 |
Q |
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| T |
10125015 |
aaaactcctaacttgttgcaaattttttaggctaccatataactaaaccatatccaaaaagtaaaaatcatatgattaaatcaaatgcctttgaattaaa |
10125114 |
T |
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| Q |
401 |
agttgtccaagatcaaataccctaaataaaatctttgtaaaatatatttccgtgaaagaaattttaggctcaaatcccagaatctctcattaactaacaa |
500 |
Q |
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| T |
10125115 |
agttgtccaagatcaaataacctaaataaatcttttgtaaaatatatttccgtgaaagatattttaggctcaaatcccagaacctctc--taactaacaa |
10125212 |
T |
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| Q |
501 |
caa |
503 |
Q |
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| T |
10125213 |
caa |
10125215 |
T |
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Back To:
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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 64 - 174
Target Start/End: Original strand, 25043246 - 25043356
Alignment:
| Q |
64 |
gtggtggaatatttgggtgggcaaacattctttgaaacggggttaacatcggaagaggaagactttgtgtgggttgttcagagtcattcattgttctcta |
163 |
Q |
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|||||||||| |||||||||| ||| || ||||||| | |||| |||||||||||||||||||||| | |||||||||||||| |||||| |||||| |
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| T |
25043246 |
gtggtggaatttttgggtgggaaaatatgaattgaaacagcgttagcatcggaagaggaagactttgtatcggttgttcagagtcgttcatttttctctt |
25043345 |
T |
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| Q |
164 |
atgggttgtga |
174 |
Q |
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| T |
25043346 |
atggattgtga |
25043356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 25043422 - 25043466
Alignment:
| Q |
239 |
attcaagggaatgagtaagactagggtatgacattggatagatat |
283 |
Q |
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| T |
25043422 |
attcaagggaatgagtaagactgggatataacaatggatagatat |
25043466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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