View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_141 (Length: 238)
Name: NF2479_low_141
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_141 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 13074288 - 13074473
Alignment:
| Q |
40 |
aatattattaattagttcttaatcagtatgatatcgaaaatatctcttaagacttaagataaattttcataatcccacta----acaacaaatacacaat |
135 |
Q |
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| T |
13074288 |
aatattattaattagttcttaatcagtaggatatcgaaaatctctcttaagatttaagatagattt-cataatcccactaactaacaacaaatacaaaat |
13074386 |
T |
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| Q |
136 |
attaattggtgaagatattcctattcatataaacatatattcaaataaatatttgtcaagtgtgggactaataacaccaaccttcat |
222 |
Q |
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| T |
13074387 |
attcattggtgaagatattcctattcatataaacacatattcaaataaatatttgtcaagtgtgggactgataacaccaaccttcat |
13074473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 13070726 - 13070802
Alignment:
| Q |
116 |
actaacaacaaatacacaatattaattggtgaagatatt-cctattcatataaacatatattcaaataaatatttgt |
191 |
Q |
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| T |
13070726 |
actaagaacaaatacacaacattaattgatgaagatattccctattcatataaacacatcttcaaataaatatttgt |
13070802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 13062822 - 13062929
Alignment:
| Q |
116 |
actaacaacaaatacacaatattaattggtgaagata------ttcctattcatataaacatatattcaaataaatatttgtcaagtgtgggactaataa |
209 |
Q |
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| T |
13062822 |
actaagaacaaatacacaacattaattggtgaagataatatattccctgttcatataaacacatcttcaaataaatatttgttcaatatgggactgataa |
13062921 |
T |
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| Q |
210 |
caccaacc |
217 |
Q |
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| T |
13062922 |
cacaaacc |
13062929 |
T |
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