View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_145 (Length: 236)
Name: NF2479_low_145
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_145 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 9075599 - 9075819
Alignment:
| Q |
1 |
ttcaatgattggaggcctctcagataccttaatacttcattattttttgtcagtgttccacactatgtcttgcaaccctgacgaaaagattttgtagaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9075599 |
ttcaatgattggaggcctctcagataccttaatacttcattattttttgtcagtgttccacactatgtcttgcaaccctgatgaaaagattttgtagaac |
9075698 |
T |
|
| Q |
101 |
tgcatagaaaacaatgaataagatgttaaaaagatttatatgcctataaatagatttatatttcttttgcccaaaaaactaaattgagaatcaaaatact |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9075699 |
tgcatacaaaacaatgaataagatgttaaaaagatttatatgcctataaatagatttatatttcttttgcccaaaaaactaaattgagaatcaaaataat |
9075798 |
T |
|
| Q |
201 |
tttcacatgccttgtgaaact |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
9075799 |
tttcacatgccttgtgaaact |
9075819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 9084275 - 9084380
Alignment:
| Q |
23 |
gataccttaatacttcattattttttgtcagtgttccacactatgtcttgcaaccctgacgaaaagattttgtagaactgcatagaaaacaatgaataag |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| | ||||||||| |
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| T |
9084275 |
gataccttaatacttcattattttttgtcagtgttccacactatgtcttgcaaccctgatgaaaaggttttgtagaactgcatataaatcgatgaataag |
9084374 |
T |
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| Q |
123 |
atgtta |
128 |
Q |
| |
|
|||||| |
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|
| T |
9084375 |
atgtta |
9084380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 9084523 - 9084578
Alignment:
| Q |
165 |
ttttgcccaaaaaactaaattgagaatcaaaatacttttcacatgccttgtgaaact |
221 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
9084523 |
ttttgcccaaaa-actaaattgagaatcaaaataattttcacttgccttgtgaaact |
9084578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 6415479 - 6415584
Alignment:
| Q |
23 |
gataccttaatacttcattattttttgtcagtgttccacactatgtcttgcaaccctgacgaaaagattttgtagaactgcatagaaaacaatgaataag |
122 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| | ||||||||| |
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|
| T |
6415479 |
gataccttaatacttcattattttttgtcagtgttccacactatgtcttgcaaccctgatgaaaaggttttgtagaactgcatataaatcgatgaataag |
6415578 |
T |
|
| Q |
123 |
atgtta |
128 |
Q |
| |
|
|||||| |
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|
| T |
6415579 |
atgtta |
6415584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 6415727 - 6415782
Alignment:
| Q |
165 |
ttttgcccaaaaaactaaattgagaatcaaaatacttttcacatgccttgtgaaact |
221 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
6415727 |
ttttgcccaaaa-actaaattgagaatcaaaataattttcacttgccttgtgaaact |
6415782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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