View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_157 (Length: 207)
Name: NF2479_low_157
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_157 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 49197379 - 49197500
Alignment:
| Q |
64 |
ggtgggtagagttatcaatgttgagttgacacggatcaaaattattcatttgtcttctaatattttataacataaatagtggaagataaatatatgactt |
163 |
Q |
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| T |
49197379 |
ggtgggtagagttatcaatgttgagttcacaccgatgaaaattattcatttgtcttctaatattttataacataaatagtggaagataaatatatgattt |
49197478 |
T |
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| Q |
164 |
tgattggtctcaacccaacata |
185 |
Q |
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| T |
49197479 |
tgattggtgtgaacccaacata |
49197500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 149
Target Start/End: Complemental strand, 41904368 - 41904306
Alignment:
| Q |
87 |
agttgacacggatcaaaattattcatttgtcttctaatattttataacataaatagtggaaga |
149 |
Q |
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| T |
41904368 |
agttgacaccaattaaaaatattcatttgttttaaactattttataacataaatagtggaaga |
41904306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 26532760 - 26532801
Alignment:
| Q |
81 |
atgttgagttgacacggatcaaaattattcatttgtcttcta |
122 |
Q |
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| T |
26532760 |
atgttgagttgacaccaatcaaaattatttatttgtcttcta |
26532801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 28074121 - 28074208
Alignment:
| Q |
76 |
tatcaatgttgagttgacacggatcaaaattattcatttgtcttctaatat---tttataacataaatagtggaagataaatatatga |
160 |
Q |
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| T |
28074121 |
tatccatgttgagttgacagtaatcaaaattattcatttgtattcgaatatatatatataacataaataatgaaagacaaataaatga |
28074208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 15642553 - 15642493
Alignment:
| Q |
81 |
atgttgagttgacacggatcaaaattattcatttgtcttctaatattttataacataaata |
141 |
Q |
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||||||||||||||| |||||||||||||| ||||||| | || ||| ||||||||||| |
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| T |
15642553 |
atgttgagttgacactaatcaaaattattcacctgtcttccattagtttgtaacataaata |
15642493 |
T |
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