View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2479_low_19 (Length: 465)
Name: NF2479_low_19
Description: NF2479
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2479_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 2 - 448
Target Start/End: Original strand, 43970329 - 43970772
Alignment:
| Q |
2 |
gaggaggagcagagagtgaagtgggtcataggcacacgttttgagcaggcaattccatgtgcccacatggatagagcttaatagtagaacaaacgaatga |
101 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43970329 |
gaggagaagaagagagtgaagtgggtcataggcacacgttttgagcaggcaattccatgtgcccacatggatagagcttaatagtagaacaaacgaatga |
43970428 |
T |
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| Q |
102 |
agaacaacaagacgacgacnnnnnnnnnnnnnnnnnataatcaataaacatctcaaaacacaatctcaaccccnnnnnnntctcatctttattttcactt |
201 |
Q |
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| T |
43970429 |
agaacaacaagacgacgacgacgatgatgatga---ataatcaataaacatctcaaaacacaatctcaaccccaaaaaaatctcatctttattttcactt |
43970525 |
T |
|
| Q |
202 |
tctctttttctcaccaaacctataatcaatcatcatccatagattctctcagaagatgaaggaaaccagtgatgggtttgtaagagcagatcagattgat |
301 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43970526 |
tctctttttctcaccaaacccataatcaatcatcatccatagattctctcagaagatgaaggaaaccagtgatgggtttgtaagagcagatcagattgat |
43970625 |
T |
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| Q |
302 |
ctgaaaagcatcgatgaacagcttgaaagacatctcaacaaggtgttgactattgacaagaagaagcgcgttgaagaagaagattcttctgctgcttctg |
401 |
Q |
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| T |
43970626 |
ctgaaaagcatcgatgaacagcttgaaagacatctcaacaaggtgttgactattgacaagaagaagcgcgttgaagaagaagattcttctgctgcttctg |
43970725 |
T |
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| Q |
402 |
cttctgtttttgatcatgttcgtgttcacaccagcagtgcaaatact |
448 |
Q |
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| T |
43970726 |
cttctgtttttgatcatgttcgtgttcacaccagcagtgcaaatact |
43970772 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 35189309 - 35189383
Alignment:
| Q |
271 |
tgatgggtttgtaagagcagatcagattgatctgaaaagcatcgatgaacagcttgaaagacatctcaacaaggt |
345 |
Q |
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|||||||||||| ||||| ||||| |||||||| |||| ||| |||||||| ||||| | ||| |||||||||| |
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| T |
35189309 |
tgatgggtttgtgagagctgatcaaattgatctaaaaaccattgatgaacaacttgagaaacacttcaacaaggt |
35189383 |
T |
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